From owner-chemistry@ccl.net Tue May 23 04:49:01 2006 From: "Jonathan Tennyson j.tennyson:_:ucl.ac.uk" To: CCL Subject: CCL: CCP2 booklet on "Explicitly correlated wavefunctions" Message-Id: <-31812-060522185948-26882-862VEDOYFbUERS9ntaaudQ(-)server.ccl.net> X-Original-From: Jonathan Tennyson Content-Type: text/plain; format=flowed; charset=ISO-8859-1 Date: 22 May 2006 22:13:56 +0000 Mime-Version: 1.0 Sent to CCL by: Jonathan Tennyson [j.tennyson(a)ucl.ac.uk] A booklet edited by Edward Armour, Jan Franz and Jonathan Tennyson containing write-ups of the CCP2 Workshop on "Explicitly correlated wavefunctions" which was held in Nottingham in April is now available free of charge. The booklet is in the usual "CCP6 style", with 12 short review articles covering many aspects of this field. To obtain a copy please e-mail Christine Johnston giving your full postal address. Further details and a pdf version of the booklet are available from www.ccp2.ac.uk Jonathan Tennyson -- Jonathan Tennyson, Department of Physics & Astronomy, mailto: j.tennyson++ucl.ac.uk University College London, Tel (work): +(44) 20 7679 7155 Gower Street, Tel (home): +(44) 20 8340 9225 London WC1E 6BT, UK Fax (if you must): +(44) 20 7679 7145 http://www.tampa.phys.ucl.ac.uk/jonny For information on my newly published book ASTRONOMICAL SPECTROSCOPY An Introduction to the Atomic and Molecular Physics of Astronomical Spectra see http://www.worldscibooks.com/physics/p371.html From owner-chemistry@ccl.net Tue May 23 07:12:01 2006 From: "Pablo Vitoria pablo.vitoria__ehu.es" To: CCL Subject: CCL: Help with Mercury / defining a plane Message-Id: <-31813-060523055213-12264-Fjz65oWU2/Tg9JAo7PKtaQ^^^server.ccl.net> X-Original-From: "Pablo Vitoria" Content-Transfer-Encoding: 7bit Content-Type: text/plain; format=flowed; charset="iso-8859-1"; reply-type=original Date: Tue, 23 May 2006 11:06:24 +0200 MIME-Version: 1.0 Sent to CCL by: "Pablo Vitoria" [pablo.vitoria[#]ehu.es] Hi Mike, I do most crystallographic calculations with PLATON (http://www.cryst.chem.uu.nl/platon/), a must-have for any crystallographer, which will report RMS error, chi-squared test, sum of residuals, distances to the plane (with standard deviation) when fitting atoms to a plane, line,... It is available for Windows and Unix/Linux, free for Academics; and it can be used both in GUI and text mode. Cheers Pablo ----- Original Message ----- > From: "Charles McCallum mmccallum() pacific.edu" To: "Vitoria, Pablo " Sent: Monday, May 22, 2006 10:09 PM Subject: CCL: Help with Mercury / defining a plane > Sent to CCL by: Charles McCallum [mmccallum|,|pacific.edu] > > --Apple-Mail-1-366570671 > Content-Transfer-Encoding: 7bit > Content-Type: text/plain; > charset=US-ASCII; > delsp=yes; > format=flowed > > A colleague of mine is using the program Mercury (http:// > www.ccdc.cam.ac.uk/products/csd_system/mercury/downloads/) to define > some planes in her crystal structure, and while it is doing what she > wants, it is not reporting an error/sum of residuals (or any other > uncertainty). I know it is a long shot with this crowd, but does > anyone have any experience with this? Either a way to extract this > information from the program, or another program that would allow us > to define planes including some atom selections, and give residuals > would be most appreciated. > > Cheers, > > Mike > > -- > C. Michael McCallum http://www.pacific.edu/college/ > chemistry/McCallum/cmccallum.html > Associate Professor > Department of Chemistry, UOP > mmccallum .at. pacific .dot. edu (209) 946-2636 v / > (209) 946-2607 fax > > > > --Apple-Mail-1-366570671 > Content-Transfer-Encoding: quoted-printable > Content-Type: text/html; > charset=ISO-8859-1 > > -khtml-line-break: after-white-space; ">A colleague of mine is using the = > program Mercury ( href=3D"http://www.ccdc.cam.ac.uk/products/csd_system/mercury/downloads/">= > http://www.ccdc.cam.ac.uk/products/csd_system/mercury/downloads/) to = > define some planes in her crystal structure, and while it is doing what = > she wants, it is not reporting an error/sum of residuals (or any other = > uncertainty).=A0 I know it is a long shot with this crowd, but does = > anyone have any experience with this?=A0 Either a way to extract this = > information from the program, or another program that would allow us to = > define planes including some atom selections, and give residuals would = > be most appreciated.

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Cheers,

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Mike

= > border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; = > font-size: 12px; font-style: normal; font-variant: normal; font-weight: = > normal; letter-spacing: normal; line-height: normal; text-align: auto; = > -khtml-text-decorations-in-effect: none; text-indent: 0px; = > -apple-text-size-adjust: auto; text-transform: none; orphans: 2; = > white-space: normal; widows: 2; word-spacing: 0px; "> class=3D"Apple-style-span" style=3D"border-collapse: separate; = > border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; = > font-size: 12px; font-style: normal; font-variant: normal; font-weight: = > normal; letter-spacing: normal; line-height: normal; text-align: auto; = > -khtml-text-decorations-in-effect: none; text-indent: 0px; = > -apple-text-size-adjust: auto; text-transform: none; orphans: 2; = > white-space: normal; widows: 2; word-spacing: 0px; ">

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0.0px"> Sans; font-family: Gill Sans; "> style=3D"font-family: Gill Sans; "> style=3D"font-family: Gill Sans; ">C. Michael McCallum = > class=3D"Apple-style-span" style=3D"font-family: Gill Sans; "> class=3D"Apple-style-span" style=3D"font-family: Gill Sans; ">=A0 =A0 =A0 > = > =A0 =A0 href=3D"http://www.pacific.edu/college/chemistry/McCallum/cmccallum.html">= > http://www.pacific.edu/college/chemistry/McCallum/cmccallum.html>

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style=3D"margin: 0.0px 0.0px 0.0px 0.0px"> size=3D"3" style=3D"font: 12.0px Gill Sans; font-family: Gill Sans; = > "> "> ">Department of Chemistry, UOP class=3D"Apple-converted-space"> style=3D"font-family: Gill Sans; "> style=3D"font-family: Gill Sans; ">=A0 = > =A0

0.0px"> Sans; font-family: Gill Sans; "> style=3D"font-family: Gill Sans; "> style=3D"font-family: Gill Sans; ">mmccallum .at. pacific .dot. = > edu class=3D"Apple-style-span" style=3D"font-family: Gill Sans; "> class=3D"Apple-style-span" style=3D"font-family: Gill Sans; ">=A0 =A0 =A0 > = > =A0 =A0 =A0 =A0 =A0 = > style=3D"font-family: Gill Sans; "> style=3D"font-family: Gill Sans; ">(209) 946-2636 v class=3D"Apple-converted-space"> style=3D"font-family: Gill Sans; "> style=3D"font-family: Gill Sans; ">=A0 class=3D"Apple-style-span" style=3D"font-family: Gill Sans; "> class=3D"Apple-style-span" style=3D"font-family: Gill Sans; ">/ (209) = > 946-2607 fax


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= > > --Apple-Mail-1-366570671--> > > From owner-chemistry@ccl.net Tue May 23 08:46:01 2006 From: "allouche allouche^^^lasim.univ-lyon1.fr" To: CCL Subject: CCL:G: A new version of Gabedit : GUI for Gamess-US, Gaussian, Molcas, Molpro and MPQC Message-Id: <-31814-060523051516-2370-IjGPtZdnRh5hn9Pq31LHhA(~)server.ccl.net> X-Original-From: allouche Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=ISO-8859-1; format=flowed Date: Tue, 23 May 2006 11:15:09 +0200 MIME-Version: 1.0 Sent to CCL by: allouche [allouche:+:lasim.univ-lyon1.fr] Dear CCLers, A new version of Gabedit (2.0.6) is available. You can download this new version from : http://lasim.univ-lyon1.fr/allouche/gabedit/download.php Gabedit is a Graphical User Interface for Gamess-US, Gaussian, Molcas, Molpro and MPQC computational chemistry packages. Gabedit is free. The source files are available. Precompiled executable files are available for Linux, Mac OS X11 and Windows systems. Best regards, A.R. Allouche From owner-chemistry@ccl.net Tue May 23 09:46:00 2006 From: "mikkel bo hansen mihan99[#]student.sdu.dk" To: CCL Subject: CCL:G: Error when trying to run Gaussian98 Message-Id: <-31815-060523034133-13669-myeB32gLoh81BYbFEXIlGQ{}server.ccl.net> X-Original-From: "mikkel bo hansen" Date: Tue, 23 May 2006 03:41:29 -0400 Sent to CCL by: "mikkel bo hansen" [mihan99-.-student.sdu.dk] Hi, I am trying to run Gaussian as a PBS job and have made a script for doing this. The problem is that when I try to source the g98.login file I get the following error message: bash: /home/qcsoft/g98/bsd/g98.login: line 70: syntax error: unexpected end of file Can anybody tell me why this is so? Kind regards, Mikkel From owner-chemistry@ccl.net Tue May 23 12:07:00 2006 From: "CCL CCL computationalchemist|a|gmail.com" To: CCL Subject: CCL: Coordinates of Fullerenes Message-Id: <-31817-060523104518-13961-sGUO2sZgdih+gQ+9RbyHhg]~[server.ccl.net> X-Original-From: "CCL CCL" Content-Type: multipart/alternative; boundary="----=_Part_155959_12727223.1148391856149" Date: Tue, 23 May 2006 14:44:16 +0100 MIME-Version: 1.0 Sent to CCL by: "CCL CCL" [computationalchemist##gmail.com] ------=_Part_155959_12727223.1148391856149 Content-Type: text/plain; charset=ISO-8859-1; format=flowed Content-Transfer-Encoding: quoted-printable Content-Disposition: inline Hi Friends, I'm looking for the optimized structures and coordinates of Fullerenes, Metallofullerenes and their derivatives for my students. I will be helpful if anyone takes me to the right direction to get the required. --=20 Regards, Dr. Sanjay ------=_Part_155959_12727223.1148391856149 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Content-Disposition: inline
Hi Friends,
 
I'm looking for the optimized structures and coordinates of Fulle= renes, Metallofullerenes and their derivatives for my students. I will= be helpful if anyone takes me to the right direction to get the required.<= /div>
 
--
Regards,
Dr. Sanjay
------=_Part_155959_12727223.1148391856149-- From owner-chemistry@ccl.net Tue May 23 11:32:00 2006 From: "Reinaldo Pis Diez pis_diez|-|yahoo.com.ar" To: CCL Subject: CCL:G: Error when trying to run Gaussian98 Message-Id: <-31816-060523112133-20815-8+4vcRJZBkwaSgsIpMiJ2Q*o*server.ccl.net> X-Original-From: Reinaldo Pis Diez Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=ISO-8859-1; format=flowed Date: Tue, 23 May 2006 11:19:51 -0300 MIME-Version: 1.0 Sent to CCL by: Reinaldo Pis Diez [pis_diez : yahoo.com.ar] Hi Mikkel, > > bash: /home/qcsoft/g98/bsd/g98.login: line 70: syntax error: unexpected end of file > If you're using bash shell you have to source g98.profile instead of g98.login. Hope this helps, Reinaldo ______________________________________________________ Yahoo! Autos. Más de 3.000 vehículos vendidos por mes. ¿Qué esperás para vender el tuyo? Hacelo ahora y ganate un premio de Yahoo! http://autos.yahoo.com.ar/vender/ From owner-chemistry@ccl.net Tue May 23 15:28:01 2006 From: "Laura Lynn Parker laura-parker%uiowa.edu" To: CCL Subject: CCL:G: Frozen Cartesian Coordinates in Gaussian Message-Id: <-31818-060523133407-4673-FDAHXLtQDd1FvdKyLJQ18A[a]server.ccl.net> X-Original-From: "Laura Lynn Parker" Date: Tue, 23 May 2006 13:34:05 -0400 Sent to CCL by: "Laura Lynn Parker" [laura-parker(-)uiowa.edu] I would like to run an optimization in Gaussian while freezing several of the atoms' cartesian coordinates. I tried several styles of input according to the manual, and I either get error messages, or I get an optimization where the cartesian coordinates are deffinatly not frozen. (i.e. If I freeze 4 atoms in a larger system and use the first 3 to reorient the starting and final geometry to the same coordinate system, the 4th atom is not in the same place.) My question is if anyone has successfully frozen cartesian coordinates in Gaussian, and if so, I would really appriciate an example input deck to work from. From owner-chemistry@ccl.net Tue May 23 21:58:00 2006 From: "Dipankar Roy dipankarroy:iitb.ac.in" To: CCL Subject: CCL:G: Frozen Cartesian Coordinates in Gaussian Message-Id: <-31819-060523215137-25938-UfkgLw0gPYi/nBhRb7yUsA---server.ccl.net> X-Original-From: "Dipankar Roy" Content-Transfer-Encoding: 8bit Content-Type: text/plain;charset=iso-8859-1 Date: Wed, 24 May 2006 07:21:09 +0530 (IST) MIME-Version: 1.0 Sent to CCL by: "Dipankar Roy" [dipankarroy-x-iitb.ac.in] Hi, at the end of input file put the following atom1(atom no.) atom2 atom3 atom4 F hope that will work -dipankar > Sent to CCL by: "Laura Lynn Parker" [laura-parker(-)uiowa.edu] > I would like to run an optimization in Gaussian while freezing several of > the atoms' cartesian > coordinates. I tried several styles of input according to the manual, and > I either get error messages, > or I get an optimization where the cartesian coordinates are deffinatly > not frozen. (i.e. If I freeze 4 > atoms in a larger system and use the first 3 to reorient the starting and > final geometry to the same > coordinate system, the 4th atom is not in the same place.) My question is > if anyone has > successfully frozen cartesian coordinates in Gaussian, and if so, I would > really appriciate an > example input deck to work from.> > > > *********************************************** Dipankar Roy Graduate Student of Prof. R. B. Sunoj Computational Chemistry Laboratoty Dept. of Chemistry Indian Institute of Technology, Bombay India - 400076 Phone: +91-22-2576-4130(lab) *********************************************** GETTING A SIMPLE ANSWER FROM A PROFESSOR IS LIKE GETTING A THIMBLE OF WATER FROM A FIRE HYDRANT. - PROF. LEN SHAPIRO, NDSU From owner-chemistry@ccl.net Tue May 23 22:33:01 2006 From: "Jose M. Cabrera-Trujillo jmct|a|axtel.net" To: CCL Subject: CCL: Coordinates of Fullerenes Message-Id: <-31820-060523142726-10551-hJWtq0yvCp4QByRJ5hAPAQ^^server.ccl.net> X-Original-From: "Jose M. Cabrera-Trujillo" Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=ISO-8859-1; format=flowed Date: Tue, 23 May 2006 12:38:19 -0500 MIME-Version: 1.0 Sent to CCL by: "Jose M. Cabrera-Trujillo" [jmct.:.axtel.net] Hi, I have writen a program (fortran code) which get cartesian coordinates of small and giant spherical and faceted fullerenes of the family of C_60, if you want it let me know. Regards, Dr. Cabrera CCL CCL computationalchemist|a|gmail.com wrote: > Sent to CCL by: "CCL CCL" [computationalchemist##gmail.com] > ------=_Part_155959_12727223.1148391856149 > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > Content-Transfer-Encoding: quoted-printable > Content-Disposition: inline > > Hi Friends, > > I'm looking for the optimized structures and coordinates of Fullerenes, > Metallofullerenes and their derivatives for my students. I will be helpful > if anyone takes me to the right direction to get the required. > > --=20 > Regards, > Dr. Sanjay > > ------=_Part_155959_12727223.1148391856149 > Content-Type: text/html; charset=ISO-8859-1 > Content-Transfer-Encoding: quoted-printable > Content-Disposition: inline > >
Hi Friends,
>
 
>
I'm looking for the optimized structures and coordinates of Fulle= > renes, Metallofullerenes and their derivatives for my students. I will= > be helpful if anyone takes me to the right direction to get the required.<= > /div> > >
 
>
--
Regards,
Dr. Sanjay
> > ------=_Part_155959_12727223.1148391856149--> > > > -- Dr. Jos'e M. Cabrera-Trujillo Facultad de Ciencias, UASLP 78290 San Luis Potos'i, SLP MX Phone: +52 (444) 826-2488 Fax: +52 (444) 826-2321 E-mail: cabrera^galia.fc.uaslp.mx http://galia.fc.uaslp.mx/~cabrera/ --- jmct^axtel.net