/* This file was compiled by Laura Lynn Walsh, Beckman Institute, University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801-2325 (217) 244-6764 lwalsh@nemo.life.uiuc.edu Suggested citation for use of this file is: L. L. Walsh, "Sequence Groups Derived from BLAST", personal communication, (1993). Date begun: Jan, 1993 Latest revision: May, 1993 (includes Jan, 1993 update) */ /* References: F. C. Bernstein, T. F. Koetzle, G. J. B., Williams, E. F. Meyer, Jr., M. D. Brice, J. R. Rodgers, O. Kennard, T. Shimanouchi, & M. Tasumi, "The Protein Data Bank: A Computer-based Archival File for Macromolecular Structures:, J. Mol. Biol. 112, 535-542 (1977). S. F. Altschul, W. Gish, W. Miller, E. W. Myers, & D. J. Lipman, "Basic Local Alignment Search Tool", J. Mol. Biol. 215, 403-410 (1990). */ /* This file was obtained by first running BLAST on the entire release of the Protein Data Bank, including the pre-release files. The sequences were taken from the SEQRES records of each file, a BLAST database was made of them, and then each sequence was in turn run against the whole database. From those sequences which were identical (same length, same gaps, if any), only one sequence was retained. A second "unique" data base was made and each sequence was again run against the whole data base. The sequence groups were obtained by grouping together all sequences with identities greater than 50%. These sequence groups were associated together if there was lesser, but still significant homology between them. Associated groups are separated by dotted lines. Unrelated groups are separated with solid lines. In a few sequence groups, e.g. the immunoglobulins, the homologies are not completely transitive. Protein A may be 50% identical to protein B and protein B may be 50% identical to protein C, but protein A is not 50% identical to protein C. In that case, a given protein was added to the group if it was 50% identical to at least one protein that was already in the group. NOTE: Peptides shorter than 20 amino acids frequently have homologies to segments of several otherwise unrelated proteins. These are thought to be statistically insignificant. */ ______________________________________________________________________________ Acetylcholinesterase 1ace: 1ace ______________________________________________________________________________ Aconitase 6acn: 6acn 8acn ______________________________________________________________________________ Actin 1atn.A: 1atn.A ______________________________________________________________________________ Actinidin 2act: 2act ------------------------------------------------------------------------------ Papain 9pap: 1ppn 1ppo 9pap ______________________________________________________________________________ Acylphosphatase 1aps: 1aps ______________________________________________________________________________ Alamethicin 1amt.A: 1amt.A ______________________________________________________________________________ Alcohol Dehydrogenase 8adh: 2hud.A 7adh 8adh ------------------------------------------------------------------------------ Sorbitol Dehydrogenase 1sdg: 1sdg ______________________________________________________________________________ Aldolase 1ald: 1ald 1fba.A ______________________________________________________________________________ Alpha-Amylase 2aaa: 2aaa 2taa.A 6taa ______________________________________________________________________________ Alpha-Amylase Inhibitor 1hoe: 1hoe ______________________________________________________________________________ Amicyanin 1aaj: 1aaj 1mda.E ______________________________________________________________________________ Anthranilate Isomerase 1pii: 1pii ______________________________________________________________________________ Antifreeze Peptide 1atf: 1atf ______________________________________________________________________________ Apolipoprotein D 2apd: 2apd ------------------------------------------------------------------------------ Bilin Binding Protein 1bbp.A: 1bbp.A ------------------------------------------------------------------------------ Retinol Binding Protein 1rbp: 1brp 1rbp ______________________________________________________________________________ Apolipoprotein E 1lpe: 1le2 1lpe 1le4 ______________________________________________________________________________ Arabinose Binding Protein 5abp: 1bap 5abp 8abp ______________________________________________________________________________ Aspartate Aminotransferase_cyto 1aat: 1aat ------------------------------------------------------------------------------ Aspartate Aminotransferase_mito 1ama: 1ama 7aat.A 9aat.A ------------------------------------------------------------------------------ Aspartate Aminotransferase_ecoli 2aat: 2aat 3aat ______________________________________________________________________________ Aspartate Carbamoyltransferase_bacillus_A 8atc.A: 1acm.A 2atc.A 8atc.A ------------------------------------------------------------------------------ Aspartate Carbamoyltransferase_ecoli 2at2.A: 2at2.A ______________________________________________________________________________ Aspartate Carbamoyltransferase_bacillus_B 8atc.B: 1acm.B 2atc.B 8atc.B ______________________________________________________________________________ Aspartate Receptor 1lig: 1lig ______________________________________________________________________________ Actinoxanthin 1acx: 1acx ------------------------------------------------------------------------------ Macromomycin 2mcm: 2mcm ______________________________________________________________________________ Adenosine Deaminase 1ada: 1ada ______________________________________________________________________________ Adenylate Kinase_bovine 1ak3.A: 1ak3.A ------------------------------------------------------------------------------ Adenylate Kinase_ecoli 1ake.A: 1ake.A ------------------------------------------------------------------------------ Adenylate Kinase_porcine 3adk: 3adk ______________________________________________________________________________ Annexin 1avh.A: 1avh.A ______________________________________________________________________________ ATX 1atx: 1atx ------------------------------------------------------------------------------ Neurotoxin I 1sh1: 1sh1 ______________________________________________________________________________ Azurin 2aza.A: 1azu 2aza.A ______________________________________________________________________________ Bacteriochlorophyll-A Protein 3bcl: 3bcl ______________________________________________________________________________ Bacteriorhodopsin 1brd: 1brd ______________________________________________________________________________ Barnase 1rnb.A: 1rnb.A ______________________________________________________________________________ BDS 1bds: 1bds ______________________________________________________________________________ Biotin Operon 1bia: 1bia ______________________________________________________________________________ BPTI 4pti: 1aal.A 1bpt 1bpu 1fan 4pti 4tpi.I 7pti 8pti 9pti ------------------------------------------------------------------------------ Beta-Amyloid Precursor Protein 1aap.A: 1aap.A ------------------------------------------------------------------------------ Dendrotoxin 1dtx: 1dtx ______________________________________________________________________________ Alpha Bungarotoxin_A 1nbt.A: 1nbt.A ------------------------------------------------------------------------------ Alpha Bungarotoxin_B 2abx.A: 2abx.A ------------------------------------------------------------------------------ Alpha Cobratoxin 2ctx: 2ctx ------------------------------------------------------------------------------ Toxin_cardio 1cdt.A: 1cdt.A ------------------------------------------------------------------------------ Toxin_snake 3ebx: 1nea 1ntx 1nxb 3ebx 5ebx ______________________________________________________________________________ C5A 1c5a: 1c5a ______________________________________________________________________________ Calbindin 4icb: 1cb1 3icb 4icb ------------------------------------------------------------------------------ Calmodulin & Troponin 4tnc: 1tnc 1trc.A 3cln 4cln 4tnc 5tnc ------------------------------------------------------------------------------ Oncomodulin 1rro: 1rro ------------------------------------------------------------------------------ Parvalbumin 5cpv: 1pal 5cpv 5pal ______________________________________________________________________________ Carbonic Anhydrase I 2ca2: 12ca 1bic 1cai 1caj 1cak 1cam 1hea 1heb 1hec 1hed 1hva 2ca2 4ca2 5ca2 6ca2 7ca2 8ca2 9ca2 ------------------------------------------------------------------------------ Carbonic Anhydrase II 2cab: 2cab ______________________________________________________________________________ D-Alanyl-D-Alanine Carboxypeptidase 2pte.E: 2pte.E ______________________________________________________________________________ Carboxypeptidase A Inhibitor 4cpa.I: 4cpa.I ______________________________________________________________________________ Carboxypeptidase B 1pba: 1pba ______________________________________________________________________________ cAMP Dependent Protein Kinase_I 1apk: 1apk ------------------------------------------------------------------------------ cAMP Dependent Protein Kinase_II 2apk: 2apk ------------------------------------------------------------------------------ Gene Activator 3gap.A: 1cgp.C 2gap.A 3gap.A ______________________________________________________________________________ cAMP Dependent Protein Kinase_Alpha 2cpk.E: 2cpk.E ______________________________________________________________________________ cAMP Dependent Protein Kinase_Alpha Inhibitor 2cpk.I: 2cpk.I ______________________________________________________________________________ Carboxypeptidase_A 5cpa: 1cbx 5cpa ------------------------------------------------------------------------------ Carboxypeptidase_B 1cpb: 1cpb ______________________________________________________________________________ Catalase 8cat.A: 8cat.A ______________________________________________________________________________ CD8 1cd8: 1cd8 ______________________________________________________________________________ CD40 1cda.A: 1cda.A ______________________________________________________________________________ Cellobiohydrolase 1cbh: 1cbh ______________________________________________________________________________ Cellobiohydrolase II 3cbh: 3cbh ______________________________________________________________________________ Chloramphenicol Acetyltransferase 3cla: 1cla 2cla 3cla 4cla ______________________________________________________________________________ Cholesterol Oxidase 1cox: 1cox ______________________________________________________________________________ Che-Y 3chy: 2chy 3chy ______________________________________________________________________________ Chymotrypsin Inhibitor 4sgb.I: 4sgb.I ______________________________________________________________________________ Citrate Synthase 2csc: 1cts 2csc 2cts ______________________________________________________________________________ Clupeine Z 7ins.G: 7ins.G ______________________________________________________________________________ Collicin 1col.A: 1col.A ______________________________________________________________________________ Collagen 1clg.A: 1clg.A ______________________________________________________________________________ Colony-Stimulating-Factor 1gmf.A: 1gmf.A ______________________________________________________________________________ Complement Control Protein 1hcc: 1hcc ______________________________________________________________________________ Concanavalin A 2cna: 2cna 3cna 4cna.A ------------------------------------------------------------------------------ Lectin_erythina 1lte: 1lte ------------------------------------------------------------------------------ Lectin_pisum {2ltn.A 2ltn.B}: {2ltn.A 2ltn.B} ______________________________________________________________________________ Conotoxin 1ctg: 1ctg 1tch ______________________________________________________________________________ Crambin 1crn: 1crn ______________________________________________________________________________ Cro 1cro.A: 1cro.A ______________________________________________________________________________ Crystallin_beta 2bb2.A: 2bb2.A ------------------------------------------------------------------------------ Crystallin_gamma 4gcr: 1gcr 2gcr 3gcr.A 4gcr ______________________________________________________________________________ Cucumber Basic Protein 1cbp: 1cbp ______________________________________________________________________________ Cytochrome B5 3b5c: 3b5c ------------------------------------------------------------------------------ Flavocytochrome_B_domain1 1fcb.A,1-99: 1fcb.A,1-99 ______________________________________________________________________________ Cytochrome B562 256b.A: 256b.A ______________________________________________________________________________ Cytochrome C2_capsulatus 1c2r.A: 155c 1c2r.A ------------------------------------------------------------------------------ Cytochrome C 1ycc: 1ccr 1cyc 1ycc 1yea 1yeb 2ycc 5cyt.R ------------------------------------------------------------------------------ Cytochrome C2_rubrum 3c2c: 3c2c ______________________________________________________________________________ Cytochrome C3_desulfo desulficans 1cy3: 1cy3 ------------------------------------------------------------------------------ Cytochrome C3_desulfo vulgaris 2cdv: 2cdv ______________________________________________________________________________ Cytochrome C5 1cc5: 1cc5 ______________________________________________________________________________ Cytochrome C551 451c: 451c ______________________________________________________________________________ Cytochrome C553 1c53: 1c53 ______________________________________________________________________________ Cytochrome C Peroxidase 2cyp: 1ccp 2ccp 2cyp 3ccp 4ccp ______________________________________________________________________________ Cytochrome C prime_chromatium 1bbh.A: 1bbh.A ______________________________________________________________________________ Cytochrome C prime_rhodospirillum 2ccy.A: 2ccy.A ______________________________________________________________________________ Cytochrome P450CAM 2cpp: 2cp4 2cpp ______________________________________________________________________________ Cytochrome P450SCC 1scc: 1scc ______________________________________________________________________________ Defensin 1dfn.A: 1dfn.A ______________________________________________________________________________ Deoxyribonuclease I 1atn.D: 1atn.D 3dni ______________________________________________________________________________ Dihydrofolate Reductase_ecoli 4dfr.A: 1dra.A 1drb.A 3drc.A 4dfr.A 5dfr ------------------------------------------------------------------------------ Dihydrofolate Reductase_mammal 8dfr: 1drf 8dfr ------------------------------------------------------------------------------ Dihydrofolate Reductase_casei 3dfr: 3dfr ______________________________________________________________________________ Dihydrolipoamide Acetyltranferase 1pde: 1pde ------------------------------------------------------------------------------ Dihydrolipoamide Succinyltranferase 1bbl: 1bal 1bbl ______________________________________________________________________________ DNA Polymerase I 1dpi: [1al1=residues 80-91 1dpi] 1dpi ______________________________________________________________________________ Eglin C 1cse.I: 1acb.I 1cse.I 1mee.I 1sbn.I ------------------------------------------------------------------------------ Chymotrypsin Inhibitor 2ci2.I: 2ci2.I 3ci2 ______________________________________________________________________________ Elastase 1ezm: 1ezm ------------------------------------------------------------------------------ Neutral Protease 3tln: 1npc 3tln ______________________________________________________________________________ Elongation Factor 1etu: 1efm 1etu ______________________________________________________________________________ Endonuclease 1end: 1end ______________________________________________________________________________ Endonuclease_Eco RI 1r1e.E: 1r1e.E ______________________________________________________________________________ Endonuclease_Eco RV 1rve.A: 1rve.A 2rve.A ______________________________________________________________________________ Enolase 4enl: 4enl ______________________________________________________________________________ Epidermal Growth Factor 1epg: 1epg ______________________________________________________________________________ ET-1 1edp: 1edp ______________________________________________________________________________ Fatty Acid Binding Protein_muscle 2hmb: 1alb 2hmb ------------------------------------------------------------------------------ Fatty Acid Binding Protein_intestinal 1ifb: 1ifb 1ifc ______________________________________________________________________________ Felix 3flx: 3flx ______________________________________________________________________________ Ferredoxin_azotobacter 4fd1: 1fd2 2fd2 4fd1 ------------------------------------------------------------------------------ Ferredoxin_peptococcus 1fdx: 1fdx ______________________________________________________________________________ Ferredoxin_I 1fxi.A: 1fxa.A 1fxi.A 3fxc ______________________________________________________________________________ Ferredoxin_II 1fxd: 1fxd ------------------------------------------------------------------------------ Ferredoxin_bacillus 2fxb: 2fxb ______________________________________________________________________________ Ferredoxin NADP Oxidoreductase 1fnr: 1fnr ______________________________________________________________________________ Ferritin 1fha: 1fha ______________________________________________________________________________ Fibrinopeptide 1fpa: 1fpa 2fpa ______________________________________________________________________________ Fibroblast Growth Factor 2fgf: 1bar.A 1bas 2fgf ______________________________________________________________________________ FIS 1fia.A: 1fia.A 4fis.A ______________________________________________________________________________ FK506 1fkf: 1fkb 1fkf ______________________________________________________________________________ Flavocytochrome_B_domain2 1fcb.A,100-511: 1fcb.A,100-511 ------------------------------------------------------------------------------ Glycolate Oxidase 1gox: 1gox (1hsa.C) ______________________________________________________________________________ Flavodoxin_ana 1ofv: 1flv 1ofv ------------------------------------------------------------------------------ Flavodoxin_chondrus 2fcr: 2fcr ------------------------------------------------------------------------------ Flavodoxin_clostridium 4fxn: 4fxn ------------------------------------------------------------------------------ Flavodoxin_desulfovibrio 1fx1: 1fx1 2fx2 ______________________________________________________________________________ Fructose Phosphatase 5fbp.A: 1fbc.B 1fbh.A 1fbh.B 5fbp.A ______________________________________________________________________________ GCN4 Leucine Zipper 2zta.A: 2zta.A ______________________________________________________________________________ Gene 5 DNA Binding Protein 2gn5: 2gn5 ______________________________________________________________________________ Globin_A 2hhb.A: 1bab.A 1bbb.A 1bbb.B 1cmy.B 1dxt.B 1dxu.B 1dxv.B 1fdh.G 1ham.B 1hba.B 1hbs.B 1hds.A 1hds.B 1mbd 1mbs 1mbw 1myh.A 1myi.A 1myj.A 1pbx.A 1pmb.A 2dhb.A 2dhb.B 2hhb.A 2hhb.B 2mhb.A 2mhb.B 2mm1 ------------------------------------------------------------------------------ Globin_glycera 2hbg: 2hbg ------------------------------------------------------------------------------ Globin_pathogenia 1pbx.B: 1pbx.B ------------------------------------------------------------------------------ Hemoglobin V 2lhb: 2lhb ------------------------------------------------------------------------------ Hemoglobin_scapharca 1sdh.A: 1sdh.A ------------------------------------------------------------------------------ Myoglobin_aplysia 1mba: 1mba ______________________________________________________________________________ Globin_III 1ecd: 1ecd ______________________________________________________________________________ Glucagon 1gcn: 1gcn ______________________________________________________________________________ Glucoamylase 1gly: 1gly ______________________________________________________________________________ Glucocorticoid Receptor 1grd.A: 1grd.A ______________________________________________________________________________ Glucose Oxidase 1gal: 1gal ______________________________________________________________________________ Glucose Permease 1gpr: 1gpr ------------------------------------------------------------------------------ Phosphocarrier III 1f3g: 1f3g ______________________________________________________________________________ Glutamine Synthase 2gls.A: 2gls.A ______________________________________________________________________________ Glutaredoxin_viral 1aaz.A: 1aaz.A 1aba ______________________________________________________________________________ Glutaredoxin_bacterial 1ego: 1ego ______________________________________________________________________________ Glutathione Peroxidase 1gp1.A: 1gp1.A ______________________________________________________________________________ Glutathione Reductase 3grs: 3grs ------------------------------------------------------------------------------ Lipoamide Dehydrogenase 3lad.A: 1lpf.A 3lad.A ------------------------------------------------------------------------------ NADH Peroxidase 1npx: 1npx ------------------------------------------------------------------------------ Trypanothione Oxidoreductase 2tpr.A: 2tpr.A ______________________________________________________________________________ Glutathione S-Transferase 1gst.A: 1gst.A ______________________________________________________________________________ Glyceraldehyde Dehydrogenase 1gd1.O: 1gd1.O 1gga.A 3gpd.G 4gpd.1 ______________________________________________________________________________ Glycinamide Ribonucleotide Transformylase 1grc.A: 1grc.A ______________________________________________________________________________ Glycogen Phosphorylase 1gpb: 1abb.1 1gpb 1pyg.A ______________________________________________________________________________ Glycolate Oxidase 1gky: 1gky ______________________________________________________________________________ Gramicidin 1gma.A: 1gma.A ______________________________________________________________________________ Haloalkane Dehalogenase 2had: 2had ______________________________________________________________________________ Heat Shock Cognate 1hsc: 1hsc ______________________________________________________________________________ Helix-Loop-Helix 1hlh.A: 1hlh.A ______________________________________________________________________________ Hemagglutinin_A 1hgf.A: 1hgd.A 1hgf.A 1him.C 1him.F 1hin.P 2hmg.A 3hmg.A ______________________________________________________________________________ Hemagglutinin_B 1hgf.B: 1hgd.B 5hmg.B ______________________________________________________________________________ Hemerythrin 2hmq.A: 1hmo.A 1hrb 2hmq.A ------------------------------------------------------------------------------ Myohemerythrin 2mhr: 2mhr 2igf.P ______________________________________________________________________________ Hemocyanin 1hcy: 1hcy ______________________________________________________________________________ Hemoglobin_urechis 1ith.A: 1ith.A 1ith.B ______________________________________________________________________________ Hemolysin 1dhl.A: 1dhl.A ______________________________________________________________________________ Hexokinase 2yhx: 1hkg 2yhx ______________________________________________________________________________ HIPIP_chromatium 1hip: 1hip ______________________________________________________________________________ HIPIP_halophila 2hip.A: 2hip.A ______________________________________________________________________________ Hirudin 5hir: 1dwc.D 1hic 1hrg 1htc.I 5hir 6hir ______________________________________________________________________________ Histocompatibility Antigen 1vaa.A: 1hsa.A 1mha.A 1vaa.A 2hla.A 3hla.A ______________________________________________________________________________ HIV-1 Protease 5hvp.A: 1aaq 1hiv.A 4hvp.A 5hvp.A ------------------------------------------------------------------------------ HIV-2 Protease 1phv.A: 1phv.A ______________________________________________________________________________ HIV-1 Reverse Transcriptase 1hrh.A: 1hrh.A ______________________________________________________________________________ Homeodomain 2hoa: 1hdd.C 1hom 2hoa ______________________________________________________________________________ H-RAS 5p21: 121p 221p 2q21 321p 421p 4q21 521p 5p21 621p 6q21.C 721p ______________________________________________________________________________ p-Hydroxybenzoate Hydroxylase 1phh: 1phh ______________________________________________________________________________ Hydroxysteroid Dehydrogenase 1hsd.A: 1hsd.A ______________________________________________________________________________ Immun_globulins_H 2ig2.H: 1baf.H 1bbd.H 1dfb.H 1fai.H 1fc2.D 1fdl.H 1fvc.B 1fvd.B 1fve.B 1hfm.H 1hil.B 1igf.H 1igm.H 1mam.H 1mcp.H 1nca.H 1ncc.H 1pfc 2fb4.H 2fbj.H 2fvb.H 2fvw.H 2hfl.H 2ig2.H 3fab.H 3hfm.H 4fab.H 6fab.H 7fab.H 8fab.B ------------------------------------------------------------------------------ Immun_globulins_L 2ig2.L: 1baf.L 1bbd.L 1dfb.L 1fai.L 1fdl.L 1fvc.A 1fvc.C 1fvd.A 1hfm.L 1hil.A 1igf.L 1igm.L 1imm 1imn 1mam.L 1mcp.L 1mcw.W 1nca.L 1rei.A 2bjl.1 2fb4.L 2fbj.L 2fvb.L 2fvw.L 2hfl.L 2hfm.L 2mcg.1 2rhe 3fab.L 3hfm.L 4fab.L 6fab.L 7fab.L 8fab.A ------------------------------------------------------------------------------ Immun_Fc 1ige.A: 1ige.A ------------------------------------------------------------------------------ Immun_CD4 2cd4: 1cd4 2cd4 ______________________________________________________________________________ Inositol Monophosphatase 2hhm.A: 2hhm.A ______________________________________________________________________________ Insulin_A 4ins.A: 2ins.A 4ins.A ------------------------------------------------------------------------------ Insulin-like Growth Factor 1gf1: 1gf1 1gf2 ------------------------------------------------------------------------------ Insulin_B 4ins.B: 2ins.B 4ins.B 6ins.B ______________________________________________________________________________ Interferon_beta 1ifa: 1ifa ______________________________________________________________________________ Interferon_gamma 2rig: 1hig.A 2rig ______________________________________________________________________________ Interleukin_1A 2ila: 1ita 2ila ______________________________________________________________________________ Interleukin_1B 2i1b: 1mib 21bi 2i1b 31bi 41bi 8i1b ______________________________________________________________________________ Interleukin_4 1bbn: 1bbn 1rcb ______________________________________________________________________________ Interleukin_8 3il8: 3il8 ------------------------------------------------------------------------------ Monocyte Chemoattractant Protein 1mca.A: 1mca.A ______________________________________________________________________________ Isopropylmalate Dehydrogenase 1ipd: 1ipd ------------------------------------------------------------------------------ Isocitrate Dehydrogenase 3icd: 3icd 6icd 7icd ______________________________________________________________________________ Kistrin 1kst: 1kst ______________________________________________________________________________ Beta Lactamase 4blm.A: 1mbl.A 4blm.A ------------------------------------------------------------------------------ Beta Lactamase 3blm: 3blm ______________________________________________________________________________ Lactate Dehydrogenase_bacillus 1ldb: 1ldb 1ldn.A 1llc ------------------------------------------------------------------------------ Lactate Dehydrogenase_bifidobacterium 1lld.A: 1lld.A ------------------------------------------------------------------------------ Lactate Dehydrogenase_fish & mammal 6ldh: 2ldx 3ldh 5ldh 6ldh 9ldt.A ------------------------------------------------------------------------------ Malate Dehydrogenase_ecoli 2cmd: 1cme 2cmd ------------------------------------------------------------------------------ Malate Dehydrogenase_mammalian 4mdh.A: 4mdh.A ______________________________________________________________________________ Lactoferrin 1lfg: 1lfg 1lfh 1lfi 1tfd 1ovb ______________________________________________________________________________ Leghemoglobin 1lh4: 1lh4 ______________________________________________________________________________ Leucine Aminopeptidase 1lap: 1lap ______________________________________________________________________________ Leucine Binding Protein 2liv: 2lbp 2liv ______________________________________________________________________________ Lactalbumin 1alc: 1alc ------------------------------------------------------------------------------ Lysozyme_animal 1lzt: 1her 1laa 1lhh 1lhi 1lhj 1lhk 1lhl 1lhm 1lz1 1lz2 1lz3 1lzt 1tay 1tby 1tcy 1tdy 2hfl.Y 2lhm 2lz2 3lz2 ______________________________________________________________________________ Lysozyme_T4 phage 3lzm: 101l.A 102l 103l 104l.A 105l 1l00 1l01 1l02 1l03 1l04 1l06 1l07 1l08 1l09 1l10 1l11 1l12 1l13 1l14 1l15 1l16 1l17 1l18 1l19 1l20 1l21 1l22 1l23 1l24 1l25 1l26 1l27 1l28 1l29 1l30 1l31 1l32 1l33 1l34 1l35 1l36 1l37 1l38 1l39 1l40 1l41 1l42 1l44 1l45 1l46 1l47 1l48 1l49 1l50 1l51 1l52 1l53 1l54 1l55 1l56 1l57 1l58 1l59 1l60 1l61 1l62 1l63 1l64 1l65 1l66 1l67 1l68 1l69 1l70 1l71 1l72 1l73 1l74 1l75 1l76 1l83 1l84 1l85 1l86 1l87 1l88 1l91 1l92 1l93 1l94 1l95 1l96 1l97.A 1l98 1l99 1lye 1lyf 1lyg 1lyh 1lyi 1lyj 3lzm ______________________________________________________________________________ Major Urinary Protein 1mup: 1mup ______________________________________________________________________________ D-Maltodextrin Binding Protein 1omp: 1mbp 1omp 2mbp ______________________________________________________________________________ Mandelate Racemase 1mrm: 1mrm ------------------------------------------------------------------------------ Cis, Cis Muconate Cycloisomerase 1mle: 1mle ______________________________________________________________________________ Mannose Binding Protein 2msb.A: 2msb.A ______________________________________________________________________________ Melittin 2mlt.A: 2mlt.A ______________________________________________________________________________ Metallothionein 3mt2: {1mhu 2mhu} {1mrb 2mrb} {1mrt 2mrt} 3mt2 ------------------------------------------------------------------------------ Bowman Birk Inhibitor 1tab.I: 1bbi 1tab.I 1pi2 ______________________________________________________________________________ Methylamine Dehydrogenase_paracoccus_H 1bbk.A: 1bbk.A ------------------------------------------------------------------------------ Methylamine Dehydrogenase_thiobacillus_H 1mda.A: 1mad.H 1mda.A ------------------------------------------------------------------------------ Methylamine Dehydrogenase_thiobacillus2_H 2mad.H: 2mad.H ______________________________________________________________________________ Methylamine Dehydrogenase_L 1bbk.B: 1bbk.B 1mad.L 1mda.B 2mad.L ______________________________________________________________________________ Beta-2-Microglobulin 1hsa.B: 1hla.M 1hsa.B 1vaa.B ______________________________________________________________________________ Monellin_A 1mon.A: 1mon.A ______________________________________________________________________________ Monellin_B 1mon.B: 1mon.B ______________________________________________________________________________ MS2 Virus Coat Protein 1ms2.A: 1ms2.A ______________________________________________________________________________ Muconolactone Isomerase 1mli: 1mli ______________________________________________________________________________ Murein Lipoprotein 1mlp.A: 1mlp.A ______________________________________________________________________________ Myosin Light Chain Kinase 2bbm.B: 2bbm.B ______________________________________________________________________________ Neuraminidase N9 2nn9: 1nca.N 1ncb.N 1ncc.N 1ncd.N 2nn9 3nn9 4nn9 5nn9 6nn9 ------------------------------------------------------------------------------ Neuraminidase N2 2bat: 1nn2 2bat ------------------------------------------------------------------------------ Neuraminidase Sialidase 1nsb.A: 1nsb.A ______________________________________________________________________________ Neurophysin II 1bn2.1: 1bn2.1 ______________________________________________________________________________ Nitrite Reductase 1nrd: 1nrd ______________________________________________________________________________ Nitrogenase Iron Protein 1nip.A: 1nip.A ______________________________________________________________________________ Nucleocapsid Protein 1aaf: 1aaf {1ncp.N 1ncp.C} 2znf ______________________________________________________________________________ Ovalbumin 1ova.A: 1ova.A ------------------------------------------------------------------------------ Alpha-1 Proteinase Inhibitor {7api.A 7api.B}: {7api.A 7api.B} ______________________________________________________________________________ Ovomucoid Inhibitor 1ovo.A: 1ovo.A 2ovo 3sgb.I ------------------------------------------------------------------------------ Proteinase Inhibitor IIA 2bus: 2bus ------------------------------------------------------------------------------ Trypsin Inhibitor 1tgs.I: 1cgi.I 1cgj.I 1tgs.I ______________________________________________________________________________ Oxytocin 1xy1.A: 1xy1.A (1gmf.A) (1ald) ______________________________________________________________________________ PAPd Chaperone Protein 3dpa: 3dpa ______________________________________________________________________________ Pancreatic Polypeptide_bovine 1bba: 1bba ------------------------------------------------------------------------------ Pancreatic Polypeptide_avian 1ppt: 1ppt ______________________________________________________________________________ Parvovirus 2dpv: 2dpv ______________________________________________________________________________ PDC-109 1pdc: 1pdc ______________________________________________________________________________ Peptide 3apr.I: 1er8.I 2er7.I 2er9.I 2phv.I 3apr.I 3er5.I ______________________________________________________________________________ Peptide 1hvp.S: 1hvp.S 7hvp.C (1sdg) (4enl) ______________________________________________________________________________ Peptide 1vaa.P: 1vaa.P (1fcb.A) (1wsy.A) (1lfg) (1lfh) (1lfi) and others ______________________________________________________________________________ Peptide 1vab.P: (1hcy) ______________________________________________________________________________ Peptide 2er6.I: 2er6.I (several large proteins) ______________________________________________________________________________ Peptide 2mvp.S: 2mvp.S ______________________________________________________________________________ Peptide 5apr.I: 5apr.I (2taa.A) ______________________________________________________________________________ Phaseolin 1phs: 1phs ______________________________________________________________________________ Phosphofructokinase 1pfk.A: 1pfk.A 2pfk.C 4pfk ______________________________________________________________________________ Phosphoglucomutase 2pmg.A: 2pmg.A ______________________________________________________________________________ 6-Phosphogluconate Dehydrogenase 1pgd: 1pgd ______________________________________________________________________________ Phosphoglycerate Kinase 3pgk: 3pgk ______________________________________________________________________________ Phosphoglycerate Mutase 3pgm: 3pgm ______________________________________________________________________________ Phospholipase_agkistrodon 1ppa: 1ppa ------------------------------------------------------------------------------ Phospholipase_bovine&porcine 4bp2: 1bp2 1bpq 2bp2 3bp2 3p2p.A 4bp2 4p2p 5p2p.A ------------------------------------------------------------------------------ Phospholipase_crotalus 1pp2.L: 1pp2.L ------------------------------------------------------------------------------ Phospholipase_human 1bbc: 1bbc ______________________________________________________________________________ Photosynthetic Reaction Center_C 1prc.C: 1prc.C ______________________________________________________________________________ Photosynthetic Reaction Center_H_viridis 1prc.H: 1prc.H ------------------------------------------------------------------------------ Photosynthetic Reaction Center_H_sphaeroides 4rcr.H: 4rcr.H ______________________________________________________________________________ Photosynthetic Reaction Center_L 1prc.L: 1prc.L 2rcr.L 4rcr.L ------------------------------------------------------------------------------ Photosynthetic Reaction Center_M 1prc.M: 1prc.M 2rcr.M 4rcr.M ______________________________________________________________________________ Photoactive Yellow Pigment 1phy: 1phy ______________________________________________________________________________ Phycocyanin_A 1cpc.A: 1cpc.A ------------------------------------------------------------------------------ Phycocyanin_B 1cpc.B: 1cpc.B 1cpc.L ______________________________________________________________________________ Phosphocarrier_Histidine 2hpr: 1hid 2hpr ______________________________________________________________________________ Plastocyanin 1pcy: 1pcy 7pcy 9pcy ------------------------------------------------------------------------------ Pseudoazurin 1paz: 1paz ______________________________________________________________________________ Porin 2por: 2por ______________________________________________________________________________ Protein A 1fc2.C: 1fc2.C ______________________________________________________________________________ Protein G 1pgx: 1pgx 2gb1 2igg 2igh ______________________________________________________________________________ Protocatechuate 3,4-Dioxygenase_A 1pcd.A: 1pcd.A ------------------------------------------------------------------------------ Protocatechuate 3,4-Dioxygenase_B 1pcd.B: 1pcd.B ______________________________________________________________________________ Prot-Oncogene C-Myb 1pom: 1pom ______________________________________________________________________________ Purine Nucleoside Phosphorylase 1ula: 1ula ______________________________________________________________________________ Inorganic Pyrophosphatase 1pyp: 1pyp ______________________________________________________________________________ Acid Proteinase Endothiapepsin 4ape: 3app 4ape ------------------------------------------------------------------------------ Acid Proteinase Rhizopuspepsin 2apr: 2apr ------------------------------------------------------------------------------ Pepsin 3psg: 1psa.A 3cms 4cms 3psg 4pep 5pep ------------------------------------------------------------------------------ Pepsin_mucor 1mpp: 1mpp ------------------------------------------------------------------------------ Renin 1rne: 1bbs.A 1rne 2ren ______________________________________________________________________________ Rec-A Protein 2reb: 2reb ______________________________________________________________________________ Relaxin_A 6rlx.A: 1rlx.A 6rlx.A ______________________________________________________________________________ Relaxin_B 6rlx.B: 1rlx.B 6rlx.B 6rlx.D ______________________________________________________________________________ Repressor_434 1r69: 1r69 ------------------------------------------------------------------------------ Repressor_434 Cro 2cro: 2cro ______________________________________________________________________________ Repressor_Lambda 1lmb.A: 1lmb.A ______________________________________________________________________________ Repressor_Met 1cmb.A: 1cmb.A ______________________________________________________________________________ Repressor of Primer 1rop.A: 1rop.A ______________________________________________________________________________ Resolvase 1rsl.A: 1rsl.A ______________________________________________________________________________ Rhodanese 1rhd: 1rhd ______________________________________________________________________________ Ribonuclease A 7rsa: 1rbc.S 1rbd.S 1rbe.S 1rbf.S 1rbg.S 1rbh.S 1rbi.S 1srn.A 1srn.B 7rsa ______________________________________________________________________________ Ribonuclease H 2rn2: 1rnh 2rn2 ______________________________________________________________________________ Ribonuclease Sa 1sar.A: 1sar.A ______________________________________________________________________________ Ribonuclease T1 3rnt: 1rgk 1rms 1rn4 2aad.A 3rnt 7rnt ______________________________________________________________________________ Ribosomal 1ctf: 1ctf ______________________________________________________________________________ Ricin_A 1aai.A: 1aai.A ______________________________________________________________________________ Ricin_B 1aai.B: 1aai.B ______________________________________________________________________________ Rubisco_nicotiana_L 3rub.L: 3rub.L 4rub.A 8rub.L ------------------------------------------------------------------------------ Rubisco_rubrum 5rub.A: 5rub.A 9rub.A ______________________________________________________________________________ Rubisco_nicotiana_S 3rub.S: 3rub.S 4rub.S 8rub.S ______________________________________________________________________________ Rubredoxin 4rxn: 1caa 1rdg 4rxn 6rxn 7rxn ______________________________________________________________________________ Sarcoplasmic Calcium-Binding Protein_branchiostoma 1sas: 1sas ______________________________________________________________________________ Sarcoplasmic Calcium-Binding Protein_nereis 2scp.A: 2scp.A ______________________________________________________________________________ Satellite Tobacco Necrosis Virus 2stv: 2stv ______________________________________________________________________________ Scorpion Neurotoxin 2sn3: 2sn3 ______________________________________________________________________________ Serine Carboxypeptidase_A 2sc2.A: 2sc2.A ______________________________________________________________________________ Serine Carboxypeptidase_B 2sc2.B: 2sc2.B ______________________________________________________________________________ Serine Protease_lysobacter 2alp: 1lpr.A 2alp 7lpr.A ------------------------------------------------------------------------------ Proteinase_streptomyces 2sga: 2sga 3sgb.E ______________________________________________________________________________ Silk_A 1slk.A: 1slk.A (1fba.A) ______________________________________________________________________________ Silk_F 1slk.F: 1slk.F (1bmv.2) ______________________________________________________________________________ Sindbis Virus Capsid Protein 2snv: 2snv ______________________________________________________________________________ Somatotropin_A 2hhr.A: 1bst 2hhr.A ______________________________________________________________________________ Somatotropin_B 2hhr.B: 2hhr.B ______________________________________________________________________________ Southern Bean Mosaic Virus 4sbv.A: 4sbv.A ______________________________________________________________________________ Staphylococcyl Nuclease 2sns: 1snc 1snm 2snm 2sns ______________________________________________________________________________ Streptavidin 1stp: 1stp ______________________________________________________________________________ Streptomyces Subtilisin Inhibitor 2ssi: 2sic.I 2ssi 2tld.I 3sic.I 5sic.I ______________________________________________________________________________ Sugar Binding_ribose 1dri: 1dri ------------------------------------------------------------------------------ Sugar Binding_glucose 2gbp: 2gbp 3gbp ______________________________________________________________________________ Subtilisin 1cse.E: 1cse.E 1mee.A 1s01 1s02 1sbt 1sub 1suc 1sud 2st1 2sni.E ------------------------------------------------------------------------------ Thermitase 2tec.E: 1thm 2tec.E ------------------------------------------------------------------------------ Proteinase K 2prk: 2prk ______________________________________________________________________________ Superoxide Dismutase_Cu,Zn 2sod.B: 1sdy.A 2sod.B 3sod.O ______________________________________________________________________________ Superoxide Dismutase_Iron 1abm.A: 1abm.A ------------------------------------------------------------------------------ Superoxide Dismutase_Manganese 3sdp.A: 3sdp.A ______________________________________________________________________________ Telokin 1tlk: 1tlk ______________________________________________________________________________ Tenascin 1ten: 1ten ______________________________________________________________________________ Thaumatin 1thi: 1thi ______________________________________________________________________________ Thionin 1gps: 1gps 1gpt ______________________________________________________________________________ Thioredoxin_ecoli 2trx.A: 1srx 2trx.A ------------------------------------------------------------------------------ Thioredoxin_human 3trx: 3trx ______________________________________________________________________________ Thioredoxin Reductase 1trb: 1trb ______________________________________________________________________________ Thrombin {1dwc.A 1dwc.B}: {1dwc.A 1dwc.B} 1htc.E ------------------------------------------------------------------------------ Chymotrypsin 2cga.A: 1gct.A 2cga.A ------------------------------------------------------------------------------ Hannuka Factor 1hf1: 1hf1 ------------------------------------------------------------------------------ Elastase_human leucocyte 1hne.E: 1hne.E 1ppf.E ------------------------------------------------------------------------------ Trypsin_mammalian 1tgn: 1ntp 1tgn 1trm.A 2tld.E 4ptp ------------------------------------------------------------------------------ Tonin 1ton: 1ton {2pka.A 2pka.B} ------------------------------------------------------------------------------ Cytotoxic T-Lymphocyte Proteinase 2cp1: 2cp1 ------------------------------------------------------------------------------ Rat Mast Cell Protease II 3rp2.A: 3rp2.A ------------------------------------------------------------------------------ Elastase_porcine 3est: 3est ------------------------------------------------------------------------------ Trypsin_streptomyces 1sgt: 1sgt ______________________________________________________________________________ Thymidylate Synthetase 2tsc.A: 2tsc.A 3tms 4tms ______________________________________________________________________________ Thymidine Phosphorylase 1tpt: 1tpt ______________________________________________________________________________ Tissue Plasminogen Activator_K2 1tpk.A: 1pk2 1tpk.A ------------------------------------------------------------------------------ Tissue Plasminogen Activator_K4 1pk4: 1pk4 ------------------------------------------------------------------------------ Prothrombin 2pf1: 2pf1 ______________________________________________________________________________ Transforming Growth Factor Alpha 4tgf: 4tgf ______________________________________________________________________________ Transforming Growth Factor Beta 1tgi: 1tgi ______________________________________________________________________________ Transthyretin 2pab.A: 2pab.A ______________________________________________________________________________ Triacylglycerol Acylhydrolase 4tgl.A: 1tgl 4tgl.A ______________________________________________________________________________ Trimethylamine Dehydrogenase 1tmd: 1tmd ______________________________________________________________________________ tRNA-Synthetase 1gsg.P: 1gsg.P ______________________________________________________________________________ Triose Phosphate Isomerase 1ypi.A: 1tim.A 3tim.A 5tim.A 1ypi.A 3ypi.A ______________________________________________________________________________ Tropomyocin 2tma.A: 2tma.A ______________________________________________________________________________ TRP Repressor 2wrp.R: 2wrp.R 3wrp ______________________________________________________________________________ Trypsin Inhibitor_ecballium&curcurbita 1cti: 1cti 2eti ______________________________________________________________________________ Trypsin Inhibitor_erythrina 1tie: 1tie ______________________________________________________________________________ Tryptophan Synthase_A 1wsy.A: 1wsy.A ______________________________________________________________________________ Tryptophan Synthase_B 1wsy.B: 1wsy.B ______________________________________________________________________________ Tumor Necrosis Factor 1tnf: 1tnf ______________________________________________________________________________ Tyrosyl-tRNA Synthetase 2ts1: 2ts1 4ts1.A ______________________________________________________________________________ Tobacco Mosaic Virus 2tmv.P: 2tmv.P ______________________________________________________________________________ Tomato Bushy Stunt Virus 2tbv.A: 2tbv.A ______________________________________________________________________________ Toxin_enteroA 1lts.A: 1lts.A ______________________________________________________________________________ Toxin_enteroC 1lts.C: 1lts.C ______________________________________________________________________________ Toxin_enteroD 1lts.D: 1lts.D ______________________________________________________________________________ U1 snRNP 1nrc.A: 1nrc.A ______________________________________________________________________________ Uteroglobin 1utg: 1ccd 1utg ______________________________________________________________________________ Ubiquitin 1ubq: 1ubq ______________________________________________________________________________ Ubiquitin Conjugating Enzyme 1aak: 1aak ______________________________________________________________________________ Uridine Diphosphogalactose-4-epimerase 1udp.A: 1udp.A ______________________________________________________________________________ Variant Surface Glycoprotein 1vsg.A: 1vsg.A ______________________________________________________________________________ Vertotoxin 1bov.A: 1bov.A ______________________________________________________________________________ Viral Protease_rous sarcoma 2rsp.A: 1mvp.A 2rsp.A ______________________________________________________________________________ Virus_Bean Pod Mottle_1 1bmv.1: 1bmv.1 ______________________________________________________________________________ Virus_Foot and Mouth_1 1bbt.1: 1bbt.1 ______________________________________________________________________________ Virus_Mengo Encephalomyocarditis_1 2mev.1: 1mec.1 2mev.1 ------------------------------------------------------------------------------ Virus_Encephalomyelitis_1 1tme.1: 1tme.1 1tmf.1 ______________________________________________________________________________ Virus_Rhinovirus S1A_1 1r1a.1: 1r1a.1 ------------------------------------------------------------------------------ Virus_Rhinovirus 14_1 4rhv.1: 1rmu.1 2rmu.1 4rhv.1 ------------------------------------------------------------------------------ Virus_Poliovirus_1 2plv.1: 2plv.1 ______________________________________________________________________________ Virus_Phix174_1 2bpa.1: 2bpa.1 ______________________________________________________________________________ Virus_Bean Pod Mottle_2 1bmv.2: 1bmv.2 ______________________________________________________________________________ Virus_Foot and Mouth_2 1bbt.2: 1bbt.2 ------------------------------------------------------------------------------ Virus_Rhinovirus S1A_2 2plv.2: 1r1a.2 2plv.2 4rhv.2 ------------------------------------------------------------------------------ Virus_Encephalitis_2 1tme.2: 1tme.2 1tmf.2 2mev.2 ______________________________________________________________________________ Virus_Phix174_2 2bpa.2: 2bpa.2 ______________________________________________________________________________ Virus_Foot and Mouth_3 1bbt.3: 1bbt.3 ------------------------------------------------------------------------------ Virus_Mengo Encephalomyocarditis_3 2mev.3: 1mec.3 2mev.3 ------------------------------------------------------------------------------ Virus_Encephalomyelitis_3 1tme.3: 1tme.3 1tmf.3 ------------------------------------------------------------------------------ Virus_Rhinovirus S1A_3 2plv.3: 1r1a.3 2plv.3 4rhv.3 ______________________________________________________________________________ Virus_Phix174_3 2bpa.3: 2bpa.3 ______________________________________________________________________________ Virus_Foot and Mouth_4 1bbt.4: 1bbt.4 ------------------------------------------------------------------------------ Virus_Encephalitis_4 1tme.4: 1tme.4 1tmf.4 2mev.4 ______________________________________________________________________________ Virus_Rhinovirus S1A_4 2plv.4: 1r1a.4 2plv.4 4rhv.4 ______________________________________________________________________________ Wheat Germ Agglutinin 9wga.A: 7wga.A 9wga.A ______________________________________________________________________________ Wheat Germ Agg Peptide 1cwg.D: 1cwg.D ______________________________________________________________________________ Xylose Isomerase 1xis: 1xim.A 1xis 1xla.A 2xim.A 3xia 3xim.A 3xim.B 3xim.C 4xia.A 6xia 7xia ______________________________________________________________________________ Zinc Finger_xenopus 1znf: 1znf ______________________________________________________________________________ ZIF268 Immediate Early Gene 1zaa.C: 1zaa.C ------------------------------------------------------------------------------ Zinc Finger 1bbo: 1bbo 3znf ------------------------------------------------------------------------------ Zinc Finger_ZFY 5znf: 5znf 7znf ______________________________________________________________________________