# This is a script for the 'menu' program. It does the same stuff # that's done in the 'main' program, but you can edit this text # file to easily change the functionality, add more atoms, etc. # The '#' that begins a comment must either be at the beginning # of the line, or must be immediately preceded by a space or tab. atom c-sp3 0 -0.076 0 0 # two uncharged carbon atoms atom c-sp3 0 0.076 0 0 length 0 1 # joined by a sigma bond spring-damper 0 1 2.0e4 0.3 100 # and a spring-damper electrostatic 0 1 # extraneous; no charges # Periodically print out information about the system every 10000 #print time newline print xyz # Conditions for the simulation run time-step 1.0e-6 run 0 1.0