%!PS-Adobe-3.0
%%Creator: Windows PSCRIPT
%%Title: Microsoft Word - RELEASE.DOC
%%BoundingBox: 18 23 577 819
%%DocumentNeededResources: (atend)
%%DocumentSuppliedResources: (atend)
%%Pages: (atend)
%%BeginResource: procset Win35Dict 3 1
/Win35Dict 290 dict def Win35Dict begin/bd{bind def}bind def/in{72
mul}bd/ed{exch def}bd/ld{load def}bd/tr/translate ld/gs/gsave ld/gr
/grestore ld/M/moveto ld/L/lineto ld/rmt/rmoveto ld/rlt/rlineto ld
/rct/rcurveto ld/st/stroke ld/n/newpath ld/sm/setmatrix ld/cm/currentmatrix
ld/cp/closepath ld/ARC/arcn ld/TR{65536 div}bd/lj/setlinejoin ld/lc
/setlinecap ld/ml/setmiterlimit ld/sl/setlinewidth ld/scignore false
def/sc{scignore{pop pop pop}{0 index 2 index eq 2 index 4 index eq
and{pop pop 255 div setgray}{3{255 div 3 1 roll}repeat setrgbcolor}ifelse}ifelse}bd
/FC{bR bG bB sc}bd/fC{/bB ed/bG ed/bR ed}bd/HC{hR hG hB sc}bd/hC{
/hB ed/hG ed/hR ed}bd/PC{pR pG pB sc}bd/pC{/pB ed/pG ed/pR ed}bd/sM
matrix def/PenW 1 def/iPen 5 def/mxF matrix def/mxE matrix def/mxUE
matrix def/mxUF matrix def/fBE false def/iDevRes 72 0 matrix defaultmatrix
dtransform dup mul exch dup mul add sqrt def/fPP false def/SS{fPP{
/SV save def}{gs}ifelse}bd/RS{fPP{SV restore}{gr}ifelse}bd/EJ{gsave
showpage grestore}bd/#C{userdict begin/#copies ed end}bd/FEbuf 2 string
def/FEglyph(G  )def/FE{1 exch{dup 16 FEbuf cvrs FEglyph exch 1 exch
putinterval 1 index exch FEglyph cvn put}for}bd/SM{/iRes ed/cyP ed
/cxPg ed/cyM ed/cxM ed 72 100 div dup scale dup 0 ne{90 eq{cyM exch
0 eq{cxM exch tr -90 rotate -1 1 scale}{cxM cxPg add exch tr +90 rotate}ifelse}{cyP
cyM sub exch 0 ne{cxM exch tr -90 rotate}{cxM cxPg add exch tr -90
rotate 1 -1 scale}ifelse}ifelse}{pop cyP cyM sub exch 0 ne{cxM cxPg
add exch tr 180 rotate}{cxM exch tr 1 -1 scale}ifelse}ifelse 100 iRes
div dup scale 0 0 transform .25 add round .25 sub exch .25 add round
.25 sub exch itransform translate}bd/SJ{1 index 0 eq{pop pop/fBE false
def}{1 index/Break ed div/dxBreak ed/fBE true def}ifelse}bd/ANSIVec[
16#0/grave 16#1/acute 16#2/circumflex 16#3/tilde 16#4/macron 16#5/breve
16#6/dotaccent 16#7/dieresis 16#8/ring 16#9/cedilla 16#A/hungarumlaut
16#B/ogonek 16#C/caron 16#D/dotlessi 16#27/quotesingle 16#60/grave
16#7C/bar 16#82/quotesinglbase 16#83/florin 16#84/quotedblbase 16#85
/ellipsis 16#86/dagger 16#87/daggerdbl 16#88/circumflex 16#89/perthousand
16#8A/Scaron 16#8B/guilsinglleft 16#8C/OE 16#91/quoteleft 16#92/quoteright
16#93/quotedblleft 16#94/quotedblright 16#95/bullet 16#96/endash 16#97
/emdash 16#98/tilde 16#99/trademark 16#9A/scaron 16#9B/guilsinglright
16#9C/oe 16#9F/Ydieresis 16#A0/space 16#A1/exclamdown 16#A4/currency
16#A5/yen 16#A6/brokenbar 16#A7/section 16#A8/dieresis 16#A9/copyright
16#AA/ordfeminine 16#AB/guillemotleft 16#AC/logicalnot 16#AD/hyphen
16#AE/registered 16#AF/macron 16#B0/degree 16#B1/plusminus 16#B2/twosuperior
16#B3/threesuperior 16#B4/acute 16#B5/mu 16#B6/paragraph 16#B7/periodcentered
16#B8/cedilla 16#B9/onesuperior 16#BA/ordmasculine 16#BB/guillemotright
16#BC/onequarter 16#BD/onehalf 16#BE/threequarters 16#BF/questiondown
16#C0/Agrave 16#C1/Aacute 16#C2/Acircumflex 16#C3/Atilde 16#C4/Adieresis
16#C5/Aring 16#C6/AE 16#C7/Ccedilla 16#C8/Egrave 16#C9/Eacute 16#CA
/Ecircumflex 16#CB/Edieresis 16#CC/Igrave 16#CD/Iacute 16#CE/Icircumflex
16#CF/Idieresis 16#D0/Eth 16#D1/Ntilde 16#D2/Ograve 16#D3/Oacute 16#D4
/Ocircumflex 16#D5/Otilde 16#D6/Odieresis 16#D7/multiply 16#D8/Oslash
16#D9/Ugrave 16#DA/Uacute 16#DB/Ucircumflex 16#DC/Udieresis 16#DD/Yacute
16#DE/Thorn 16#DF/germandbls 16#E0/agrave 16#E1/aacute 16#E2/acircumflex
16#E3/atilde 16#E4/adieresis 16#E5/aring 16#E6/ae 16#E7/ccedilla 16#E8
/egrave 16#E9/eacute 16#EA/ecircumflex 16#EB/edieresis 16#EC/igrave
16#ED/iacute 16#EE/icircumflex 16#EF/idieresis 16#F0/eth 16#F1/ntilde
16#F2/ograve 16#F3/oacute 16#F4/ocircumflex 16#F5/otilde 16#F6/odieresis
16#F7/divide 16#F8/oslash 16#F9/ugrave 16#FA/uacute 16#FB/ucircumflex
16#FC/udieresis 16#FD/yacute 16#FE/thorn 16#FF/ydieresis ] def/reencdict
12 dict def/IsChar{basefontdict/CharStrings get exch known}bd/MapCh{dup
IsChar not{pop/bullet}if newfont/Encoding get 3 1 roll put}bd/MapDegree{16#b0
/degree IsChar{/degree}{/ring}ifelse MapCh}bd/MapBB{16#a6/brokenbar
IsChar{/brokenbar}{/bar}ifelse MapCh}bd/ANSIFont{reencdict begin/newfontname
ed/basefontname ed FontDirectory newfontname known not{/basefontdict
basefontname findfont def/newfont basefontdict maxlength dict def basefontdict{exch
dup/FID ne{dup/Encoding eq{exch dup length array copy newfont 3 1 roll
put}{exch newfont 3 1 roll put}ifelse}{pop pop}ifelse}forall newfont
/FontName newfontname put 127 1 159{newfont/Encoding get exch/bullet
put}for ANSIVec aload pop ANSIVec length 2 idiv{MapCh}repeat MapDegree
MapBB newfontname newfont definefont pop}if newfontname end}bd/SB{FC
/ULlen ed/str ed str length fBE not{dup 1 gt{1 sub}if}if/cbStr ed
/dxGdi ed/y0 ed/x0 ed str stringwidth dup 0 ne{/y1 ed/x1 ed y1 y1
mul x1 x1 mul add sqrt dxGdi exch div 1 sub dup x1 mul cbStr div exch
y1 mul cbStr div}{exch abs neg dxGdi add cbStr div exch}ifelse/dyExtra
ed/dxExtra ed x0 y0 M fBE{dxBreak 0 BCh dxExtra dyExtra str awidthshow}{dxExtra
dyExtra str ashow}ifelse fUL{x0 y0 M dxUL dyUL rmt ULlen fBE{Break
add}if 0 mxUE transform gs rlt cyUL sl [] 0 setdash st gr}if fSO{x0
y0 M dxSO dySO rmt ULlen fBE{Break add}if 0 mxUE transform gs rlt cyUL
sl [] 0 setdash st gr}if n/fBE false def}bd/font{/name ed/Ascent ed
0 ne/fT3 ed 0 ne/fSO ed 0 ne/fUL ed/Sy ed/Sx ed 10.0 div/ori ed -10.0
div/esc ed/BCh ed name findfont/xAscent 0 def/yAscent Ascent def/ULesc
esc def ULesc mxUE rotate pop fT3{/esc 0 def xAscent yAscent mxUE transform
/yAscent ed/xAscent ed}if [Sx 0 0 Sy neg xAscent yAscent] esc mxE
rotate mxF concatmatrix makefont setfont [Sx 0 0 Sy neg 0 Ascent] mxUE
mxUF concatmatrix pop fUL{currentfont dup/FontInfo get/UnderlinePosition
known not{pop/Courier findfont}if/FontInfo get/UnderlinePosition get
1000 div 0 exch mxUF transform/dyUL ed/dxUL ed}if fSO{0 .3 mxUF transform
/dySO ed/dxSO ed}if fUL fSO or{currentfont dup/FontInfo get/UnderlineThickness
known not{pop/Courier findfont}if/FontInfo get/UnderlineThickness get
1000 div Sy mul/cyUL ed}if}bd/min{2 copy gt{exch}if pop}bd/max{2 copy
lt{exch}if pop}bd/CP{/ft ed{{ft 0 eq{clip}{eoclip}ifelse}stopped{currentflat
1 add setflat}{exit}ifelse}loop}bd/patfont 10 dict def patfont begin
/FontType 3 def/FontMatrix [1 0 0 -1 0 0] def/FontBBox [0 0 16 16]
def/Encoding StandardEncoding def/BuildChar{pop pop 16 0 0 0 16 16
setcachedevice 16 16 false [1 0 0 1 .25 .25]{pat}imagemask}bd end/p{
/pat 32 string def{}forall 0 1 7{dup 2 mul pat exch 3 index put dup
2 mul 1 add pat exch 3 index put dup 2 mul 16 add pat exch 3 index
put 2 mul 17 add pat exch 2 index put pop}for}bd/pfill{/PatFont patfont
definefont setfont/ch(AAAA)def X0 64 X1{Y1 -16 Y0{1 index exch M ch
show}for pop}for}bd/vert{X0 w X1{dup Y0 M Y1 L st}for}bd/horz{Y0 w
Y1{dup X0 exch M X1 exch L st}for}bd/fdiag{X0 w X1{Y0 M X1 X0 sub dup
rlt st}for Y0 w Y1{X0 exch M Y1 Y0 sub dup rlt st}for}bd/bdiag{X0 w
X1{Y1 M X1 X0 sub dup neg rlt st}for Y0 w Y1{X0 exch M Y1 Y0 sub dup
neg rlt st}for}bd/AU{1 add cvi 15 or}bd/AD{1 sub cvi -16 and}bd/SHR{pathbbox
AU/Y1 ed AU/X1 ed AD/Y0 ed AD/X0 ed}bd/hfill{/w iRes 37.5 div round
def 0.1 sl [] 0 setdash n dup 0 eq{horz}if dup 1 eq{vert}if dup 2 eq{fdiag}if
dup 3 eq{bdiag}if dup 4 eq{horz vert}if 5 eq{fdiag bdiag}if}bd/F{/ft
ed fm 256 and 0 ne{gs FC ft 0 eq{fill}{eofill}ifelse gr}if fm 1536
and 0 ne{SHR gs HC ft CP fm 1024 and 0 ne{/Tmp save def pfill Tmp restore}{fm
15 and hfill}ifelse gr}if}bd/S{PenW sl PC st}bd/m matrix def/GW{iRes
12 div PenW add cvi}bd/DoW{iRes 50 div PenW add cvi}bd/DW{iRes 8 div
PenW add cvi}bd/SP{/PenW ed/iPen ed iPen 0 eq iPen 6 eq or{[] 0 setdash}if
iPen 1 eq{[DW GW] 0 setdash}if iPen 2 eq{[DoW GW] 0 setdash}if iPen
3 eq{[DW GW DoW GW] 0 setdash}if iPen 4 eq{[DW GW DoW GW DoW GW] 0
setdash}if}bd/E{m cm pop tr scale 1 0 moveto 0 0 1 0 360 arc cp m sm}bd
/AG{/sy ed/sx ed sx div 4 1 roll sy div 4 1 roll sx div 4 1 roll sy
div 4 1 roll atan/a2 ed atan/a1 ed sx sy scale a1 a2 ARC}def/A{m cm
pop tr AG m sm}def/P{m cm pop tr 0 0 M AG cp m sm}def/RRect{n 4 copy
M 3 1 roll exch L 4 2 roll L L cp}bd/RRCC{/r ed/y1 ed/x1 ed/y0 ed/x0
ed x0 x1 add 2 div y0 M x1 y0 x1 y1 r arcto 4{pop}repeat x1 y1 x0 y1
r arcto 4{pop}repeat x0 y1 x0 y0 r arcto 4{pop}repeat x0 y0 x1 y0 r
arcto 4{pop}repeat cp}bd/RR{2 copy 0 eq exch 0 eq or{pop pop RRect}{2
copy eq{pop RRCC}{m cm pop/y2 ed/x2 ed/ys y2 x2 div 1 max def/xs x2
y2 div 1 max def/y1 exch ys div def/x1 exch xs div def/y0 exch ys div
def/x0 exch xs div def/r2 x2 y2 min def xs ys scale x0 x1 add 2 div
y0 M x1 y0 x1 y1 r2 arcto 4{pop}repeat x1 y1 x0 y1 r2 arcto 4{pop}repeat
x0 y1 x0 y0 r2 arcto 4{pop}repeat x0 y0 x1 y0 r2 arcto 4{pop}repeat
m sm cp}ifelse}ifelse}bd/PP{{rlt}repeat}bd/OB{gs 0 ne{7 3 roll/y ed
/x ed x y translate ULesc rotate x neg y neg translate x y 7 -3 roll}if
sc B fill gr}bd/B{M/dy ed/dx ed dx 0 rlt 0 dy rlt dx neg 0 rlt cp}bd
/CB{B clip n}bd/ErrHandler{errordict dup maxlength exch length gt
dup{errordict begin}if/errhelpdict 12 dict def errhelpdict begin/stackunderflow(operand stack underflow)def
/undefined(this name is not defined in a dictionary)def/VMerror(you have used up all the printer's memory)def
/typecheck(operator was expecting a different type of operand)def
/ioerror(input/output error occured)def end{end}if errordict begin
/handleerror{$error begin newerror{/newerror false def showpage 72
72 scale/x .25 def/y 9.6 def/Helvetica findfont .2 scalefont setfont
x y moveto(Offending Command = )show/command load{dup type/stringtype
ne{(max err string)cvs}if show}exec/y y .2 sub def x y moveto(Error = )show
errorname{dup type dup( max err string )cvs show( : )show/stringtype
ne{( max err string )cvs}if show}exec errordict begin errhelpdict errorname
known{x 1 add y .2 sub moveto errhelpdict errorname get show}if end
/y y .4 sub def x y moveto(Stack =)show ostack{/y y .2 sub def x 1
add y moveto dup type/stringtype ne{( max err string )cvs}if show}forall
showpage}if end}def end}bd end
%%EndResource
/SVDoc save def
%%EndProlog
%%BeginSetup
Win35Dict begin
ErrHandler
statusdict begin 0 setjobtimeout end
statusdict begin statusdict /jobname (Microsoft Word - RELEASE.DOC) put end
/oldDictCnt countdictstack def {}stopped 
{ countdictstack oldDictCnt lt { Win35Dict begin } 
{1 1 countdictstack oldDictCnt sub {pop end } for } ifelse } if 
/oldDictCnt countdictstack def {a4
}stopped 
{ countdictstack oldDictCnt lt { Win35Dict begin } 
{1 1 countdictstack oldDictCnt sub {pop end } for } ifelse } if 
[
{mark 1.0 1.0 .98 .9 .82 .68 .56 .48 .28 .1 .06 .0 counttomark dup 3 add -1 roll exch 2 sub mul dup floor cvi dup 3 1 roll sub exch dup  3 add index exch 2 add index dup 4 1 roll sub mul add counttomark 1 add 1 roll  cleartomark } bind
/exec load currenttransfer /exec load] cvx settransfer
%%EndSetup
%%Page: 1 1
%%PageResources: (atend)
SS
0 0 25 31 776 1169 300 SM
32 0 0 83 83 0 0 0 75 /Times-Bold /font29 ANSIFont font
0 0 0 fC
265 261 956 (RasMol v2.6 Release Notes) 956 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 415 243 (Roger Sayle) 243 SB
265 474 726 (Biomolecular Structure Department,) 726 SB
265 533 868 (Glaxo Wellcome Research & Development,) 868 SB
265 592 620 (Stevenage, Hertfordshire, U.K.) 620 SB
265 710 338 (September 1995.) 338 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 828 470 ([1] INTRODUCTION) 470 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 887 99 (This ) 102 SB
367 887 209 (document ) 212 SB
579 887 195 (describes ) 198 SB
777 887 74 (the ) 77 SB
854 887 119 (many ) 122 SB
976 887 95 (new ) 98 SB
1074 887 170 (features ) 173 SB
1247 887 84 (and ) 87 SB
1334 887 290 (enhancements ) 293 SB
1627 887 226 (introduced ) 229 SB
1856 887 49 (in ) 53 SB
1909 887 156 (RasMol) 156 SB
265 946 113 (v2.6. ) 115 SB
380 946 13 ( ) 15 SB
395 946 48 (A ) 50 SB
445 946 115 (more ) 117 SB
562 946 194 (complete ) 196 SB
758 946 232 (description ) 234 SB
992 946 54 (of ) 56 SB
1048 946 74 (the ) 76 SB
1124 946 260 (functionality ) 262 SB
1386 946 54 (of ) 56 SB
1442 946 74 (the ) 76 SB
1518 946 169 (RasMol ) 171 SB
1689 946 208 (molecular ) 210 SB
1899 946 166 (graphics) 166 SB
265 1005 176 (package ) 178 SB
443 1005 44 (is ) 46 SB
489 1005 120 (given ) 122 SB
611 1005 49 (in ) 51 SB
662 1005 74 (the ) 76 SB
738 1005 169 (RasMol ) 171 SB
909 1005 96 (user ) 98 SB
1007 1005 168 (manual. ) 170 SB
1177 1005 13 ( ) 16 SB
1193 1005 99 (This ) 102 SB
1295 1005 308 (documentation ) 311 SB
1606 1005 44 (is ) 47 SB
1653 1005 182 (intended ) 185 SB
1838 1005 71 (for ) 74 SB
1912 1005 153 (existing) 153 SB
265 1064 115 (users ) 126 SB
391 1064 54 (of ) 65 SB
456 1064 169 (RasMol ) 180 SB
636 1064 113 (v2.5, ) 124 SB
760 1064 84 (and ) 95 SB
855 1064 195 (describes ) 206 SB
1061 1064 98 (only ) 109 SB
1170 1064 74 (the ) 85 SB
1255 1064 171 (changes ) 182 SB
1437 1064 119 (made ) 130 SB
1567 1064 112 (since ) 123 SB
1690 1064 74 (the ) 85 SB
1775 1064 81 (last ) 93 SB
1868 1064 149 (release ) 161 SB
2029 1064 36 (in) 36 SB
265 1123 288 (October 1994.) 288 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1241 376 ([2] RENDERING) 376 SB
265 1359 703 ([2.1] Display of Protein Cartoons) 703 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 1418 90 (The ) 108 SB
373 1418 159 (ribbons ) 177 SB
550 1418 295 (representation ) 313 SB
863 1418 49 (in ) 67 SB
930 1418 169 (RasMol ) 187 SB
1117 1418 78 (has ) 96 SB
1213 1418 105 (been ) 124 SB
1337 1418 192 (extended ) 211 SB
1548 1418 54 (to ) 73 SB
1621 1418 121 (allow ) 140 SB
1761 1418 74 (the ) 93 SB
1854 1418 151 (display ) 170 SB
2024 1418 41 (of) 41 SB
265 1477 237 (Richardson ) 243 SB
508 1477 248 (\(MolScript\) ) 254 SB
762 1477 104 (style ) 111 SB
873 1477 154 (protein ) 161 SB
1034 1477 197 (cartoons. ) 204 SB
1238 1477 13 ( ) 20 SB
1258 1477 90 (The ) 97 SB
1355 1477 74 (are ) 81 SB
1436 1477 190 (currently ) 197 SB
1633 1477 266 (implemented ) 273 SB
1906 1477 54 (as ) 61 SB
1967 1477 98 (thick) 98 SB
265 1536 141 (\(deep\) ) 144 SB
409 1536 172 (ribbons. ) 175 SB
584 1536 13 ( ) 16 SB
600 1536 90 (The ) 93 SB
693 1536 144 (easiest ) 147 SB
840 1536 94 (way ) 97 SB
937 1536 54 (to ) 57 SB
994 1536 136 (obtain ) 139 SB
1133 1536 35 (a ) 38 SB
1171 1536 165 (cartoon ) 168 SB
1339 1536 295 (representation ) 299 SB
1638 1536 54 (of ) 58 SB
1696 1536 35 (a ) 39 SB
1735 1536 154 (protein ) 158 SB
1893 1536 44 (is ) 48 SB
1941 1536 54 (to ) 58 SB
1999 1536 66 (use) 66 SB
265 1595 74 (the ) 87 SB
352 1595 95 (new ) 108 SB
460 1595 197 (\221cartoon\222 ) 210 SB
670 1595 141 (option ) 154 SB
824 1595 63 (on ) 76 SB
900 1595 74 (the ) 87 SB
987 1595 183 (\221display\222 ) 196 SB
1183 1595 134 (menu. ) 147 SB
1330 1595 13 ( ) 26 SB
1356 1595 90 (The ) 103 SB
1459 1595 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1480 1599 240 (cartoon ) 253 SB
1733 1599 240 () 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1973 1595 35 (\224 ) 49 SB
2022 1595 43 (or) 43 SB
265 1657 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 1661 270 (cartoons ) 287 SB
573 1661 240 () 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
813 1657 35 (\224 ) 52 SB
865 1657 206 (command ) 223 SB
1088 1657 63 (on ) 80 SB
1168 1657 74 (the ) 91 SB
1259 1657 169 (RasMol ) 187 SB
1446 1657 206 (command ) 224 SB
1670 1657 83 (line ) 101 SB
1771 1657 215 (represents ) 233 SB
2004 1657 61 (the) 61 SB
265 1719 190 (currently ) 202 SB
467 1719 172 (selected ) 184 SB
651 1719 174 (residues ) 187 SB
838 1719 54 (as ) 67 SB
905 1719 35 (a ) 48 SB
953 1719 107 (deep ) 120 SB
1073 1719 140 (ribbon ) 153 SB
1226 1719 100 (with ) 113 SB
1339 1719 125 (width ) 138 SB
1477 1719 187 (specified ) 200 SB
1677 1719 60 (by ) 73 SB
1750 1719 74 (the ) 87 SB
1837 1719 228 (command\222s) 228 SB
265 1778 213 (argument. ) 218 SB
483 1778 13 ( ) 18 SB
501 1778 129 (Using ) 134 SB
635 1778 74 (the ) 79 SB
714 1778 206 (command ) 211 SB
925 1778 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
946 1782 240 (cartoons) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1186 1778 35 (\224 ) 41 SB
1227 1778 166 (without ) 172 SB
1399 1778 35 (a ) 41 SB
1440 1778 212 (parameter ) 218 SB
1658 1778 74 (the ) 80 SB
1738 1778 159 (ribbons ) 165 SB
1903 1778 125 (width ) 131 SB
2034 1778 31 (is) 31 SB
265 1840 121 (taken ) 126 SB
391 1840 108 (from ) 113 SB
504 1840 74 (the ) 79 SB
583 1840 189 (protein\222s ) 194 SB
777 1840 213 (secondary ) 218 SB
995 1840 203 (structure, ) 208 SB
1203 1840 54 (as ) 59 SB
1262 1840 201 (described ) 206 SB
1468 1840 49 (in ) 54 SB
1522 1840 74 (the ) 79 SB
1601 1840 159 (ribbons ) 164 SB
1765 1840 219 (command. ) 225 SB
1990 1840 13 ( ) 19 SB
2009 1840 56 (By) 56 SB
265 1899 162 (default, ) 164 SB
429 1899 74 (the ) 76 SB
505 1899 234 (C-terminus ) 236 SB
741 1899 54 (of ) 56 SB
797 1899 234 (beta-sheets ) 236 SB
1033 1899 74 (are ) 76 SB
1109 1899 198 (displayed ) 200 SB
1309 1899 54 (as ) 56 SB
1365 1899 131 (arrow ) 133 SB
1498 1899 138 (heads. ) 140 SB
1638 1899 13 ( ) 15 SB
1653 1899 99 (This ) 101 SB
1754 1899 95 (may ) 98 SB
1852 1899 59 (be ) 62 SB
1914 1899 151 (enabled) 151 SB
265 1958 84 (and ) 90 SB
355 1958 174 (disabled ) 180 SB
535 1958 118 (using ) 124 SB
659 1958 74 (the ) 80 SB
739 1958 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
760 1962 120 (set ) 126 SB
886 1962 270 (cartoons ) 276 SB
1162 1962 270 () 270 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1432 1958 35 (\224 ) 41 SB
1473 1958 219 (command. ) 225 SB
1698 1958 13 ( ) 19 SB
1717 1958 90 (The ) 96 SB
1813 1958 124 (depth ) 130 SB
1943 1958 54 (of ) 61 SB
2004 1958 61 (the) 61 SB
265 2020 165 (cartoon ) 175 SB
440 2020 95 (may ) 105 SB
545 2020 59 (be ) 69 SB
614 2020 178 (adjusted ) 188 SB
802 2020 118 (using ) 128 SB
930 2020 74 (the ) 85 SB
1015 2020 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1036 2024 120 (set ) 131 SB
1167 2024 270 (cartoons ) 281 SB
1448 2024 240 () 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1688 2020 35 (\224 ) 46 SB
1734 2020 219 (command. ) 230 SB
1964 2020 13 ( ) 24 SB
1988 2020 77 (The) 77 SB
265 2082 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 2086 120 (set ) 123 SB
409 2086 240 (cartoons) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
649 2082 35 (\224 ) 38 SB
687 2082 206 (command ) 209 SB
896 2082 166 (without ) 169 SB
1065 2082 82 (any ) 85 SB
1150 2082 231 (parameters ) 234 SB
1384 2082 152 (returns ) 156 SB
1540 2082 115 (these ) 119 SB
1659 2082 90 (two ) 94 SB
1753 2082 160 (options ) 164 SB
1917 2082 54 (to ) 58 SB
1975 2082 90 (their) 90 SB
265 2144 286 (default values.) 286 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2262 702 ([2.2] Side-by-Side Stereo Display) 702 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2321 1203 (RasMol now provides side-by-side stereo display of images. ) 1204 SB
1469 2321 13 ( ) 14 SB
1483 2321 143 (Stereo ) 144 SB
1627 2321 168 (viewing ) 169 SB
1796 2321 54 (of ) 55 SB
1851 2321 35 (a ) 36 SB
1887 2321 178 (molecule) 178 SB
265 2380 95 (may ) 99 SB
364 2380 59 (be ) 63 SB
427 2380 141 (turned ) 145 SB
572 2380 63 (on ) 67 SB
639 2380 101 (\(and ) 105 SB
744 2380 86 (off\) ) 90 SB
834 2380 125 (either ) 129 SB
963 2380 60 (by ) 64 SB
1027 2380 186 (selecting ) 190 SB
1217 2380 186 (\223Stereo\224 ) 191 SB
1408 2380 108 (from ) 113 SB
1521 2380 74 (the ) 79 SB
1600 2380 213 (\223Options\224 ) 218 SB
1818 2380 134 (menu, ) 139 SB
1957 2380 56 (or ) 61 SB
2018 2380 47 (by) 47 SB
265 2439 137 (typing ) 141 SB
406 2439 74 (the ) 78 SB
484 2439 206 (command ) 210 SB
694 2439 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
715 2443 210 (stereo ) 214 SB
929 2443 60 (on) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
989 2439 48 (\224. ) 52 SB
1041 2439 13 ( ) 17 SB
1058 2439 120 (From ) 125 SB
1183 2439 74 (the ) 79 SB
1262 2439 169 (RasMol ) 174 SB
1436 2439 206 (command ) 211 SB
1647 2439 96 (line. ) 101 SB
1748 2439 13 ( ) 18 SB
1766 2439 90 (The ) 95 SB
1861 2439 204 (separation) 204 SB
265 2501 918 (angle between the two views may be adjusted ) 919 SB
1184 2501 100 (with ) 101 SB
1285 2501 74 (the ) 75 SB
1360 2501 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1381 2505 120 (set ) 121 SB
1502 2505 210 (stereo ) 211 SB
1713 2505 330 ([-]) 330 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
2043 2501 22 (\224) 22 SB
265 2563 219 (command, ) 235 SB
500 2563 134 (where ) 150 SB
650 2563 168 (positive ) 184 SB
834 2563 137 (values ) 153 SB
987 2563 123 (result ) 139 SB
1126 2563 49 (in ) 65 SB
1191 2563 189 (\221relaxed\222 ) 205 SB
1396 2563 168 (viewing ) 184 SB
1580 2563 84 (and ) 100 SB
1680 2563 179 (negative ) 195 SB
1875 2563 137 (values ) 154 SB
2029 2563 36 (in) 36 SB
265 2622 195 (\221crossed\222 ) 196 SB
461 2622 181 (viewing. ) 182 SB
643 2622 13 ( ) 15 SB
658 2622 214 (Currently, ) 216 SB
874 2622 134 (stereo ) 136 SB
1010 2622 168 (viewing ) 170 SB
1180 2622 44 (is ) 46 SB
1226 2622 78 (not ) 80 SB
1306 2622 212 (supported ) 214 SB
1520 2622 49 (in ) 51 SB
1571 2622 139 (vector ) 141 SB
1712 2622 220 (PostScript ) 222 SB
1934 2622 131 (output) 131 SB
265 2681 93 (files.) 93 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2799 874 ([2.3] Display of Double and Triple Bonds) 874 SB
1 #C
statusdict begin /manualfeed false store end
EJ RS
%%PageTrailer
%%PageResources: font Courier-Bold
%%+ font Times-Bold
%%+ font Times-Roman
%%Page: 2 2
%%PageResources: (atend)
SS
0 0 25 31 776 1169 300 SM
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
0 0 0 fC
265 209 169 (RasMol ) 178 SB
443 209 44 (is ) 53 SB
496 209 99 (now ) 109 SB
605 209 93 (able ) 103 SB
708 209 54 (to ) 64 SB
772 209 151 (display ) 161 SB
933 209 147 (double ) 157 SB
1090 209 84 (and ) 94 SB
1184 209 116 (triple ) 126 SB
1310 209 131 (bonds ) 141 SB
1451 209 54 (as ) 64 SB
1515 209 173 (multiple ) 183 SB
1698 209 102 (lines ) 112 SB
1810 209 56 (or ) 66 SB
1876 209 189 (cylinders.) 189 SB
265 268 201 (Currently ) 202 SB
467 268 112 (bond ) 113 SB
580 268 139 (orders ) 140 SB
720 268 74 (are ) 75 SB
795 268 98 (only ) 99 SB
894 268 99 (read ) 100 SB
994 268 108 (from ) 109 SB
1103 268 123 (MDL ) 125 SB
1228 268 95 (Mol ) 97 SB
1325 268 106 (files, ) 108 SB
1433 268 123 (Sybyl ) 125 SB
1558 268 120 (Mol2 ) 122 SB
1680 268 145 (format ) 147 SB
1827 268 106 (files, ) 108 SB
1935 268 130 (Tripos) 130 SB
265 327 188 (Alchemy ) 192 SB
457 327 145 (format ) 149 SB
606 327 93 (files ) 97 SB
703 327 84 (and ) 88 SB
791 327 164 (suitable ) 168 SB
959 327 256 (Brookhaven ) 260 SB
1219 327 110 (PDB ) 114 SB
1333 327 106 (files. ) 110 SB
1443 327 13 ( ) 18 SB
1461 327 158 (Double ) 163 SB
1624 327 101 (\(and ) 106 SB
1730 327 133 (triple\) ) 138 SB
1868 327 131 (bonds ) 136 SB
2004 327 61 (are) 61 SB
265 386 187 (specified ) 193 SB
458 386 49 (in ) 55 SB
513 386 110 (PDB ) 116 SB
629 386 93 (files ) 99 SB
728 386 60 (by ) 67 SB
795 386 212 (specifying ) 219 SB
1014 386 35 (a ) 42 SB
1056 386 120 (given ) 127 SB
1183 386 112 (bond ) 119 SB
1302 386 120 (twice ) 127 SB
1429 386 101 (\(and ) 108 SB
1537 386 113 (three ) 120 SB
1657 386 135 (times\) ) 142 SB
1799 386 49 (in ) 56 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
1855 392 210 (CONNECT) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 447 594 (records.  The display of bond ) 595 SB
860 447 139 (orders ) 140 SB
1000 447 44 (is ) 45 SB
1045 447 214 (controlled ) 215 SB
1260 447 60 (by ) 61 SB
1321 447 74 (the ) 75 SB
1396 447 169 (RasMol ) 170 SB
1566 447 206 (command ) 207 SB
1773 447 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1794 451 120 (set ) 121 SB
1915 451 150 (bonds) 150 SB
265 513 270 () 270 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
535 509 48 (\224. ) 53 SB
588 509 13 ( ) 18 SB
606 509 13 ( ) 18 SB
624 509 90 (The ) 96 SB
720 509 206 (command ) 212 SB
932 509 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
953 513 120 (set ) 126 SB
1079 513 180 (bonds ) 186 SB
1265 513 60 (on) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1325 509 35 (\224 ) 41 SB
1366 509 158 (enables ) 164 SB
1530 509 74 (the ) 80 SB
1610 509 151 (display ) 157 SB
1767 509 54 (of ) 60 SB
1827 509 112 (bond ) 118 SB
1945 509 120 (order,) 120 SB
265 571 404 (and the commands \223) 404 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
669 575 390 (set bonds off) 390 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1059 571 140 (\224 and \223) 140 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1199 575 390 (set bonds off) 390 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1589 571 295 (\224 disable them.) 295 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 692 708 ([2.4] Smooth alpha-carbon Trace) 708 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 751 90 (The ) 98 SB
363 751 205 (semantics ) 213 SB
576 751 54 (of ) 62 SB
638 751 74 (the ) 82 SB
720 751 169 (RasMol ) 177 SB
897 751 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
918 755 150 (trace) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1068 751 35 (\224 ) 44 SB
1112 751 206 (command ) 215 SB
1327 751 105 (have ) 114 SB
1441 751 105 (been ) 114 SB
1555 751 190 (changed. ) 199 SB
1754 751 13 ( ) 22 SB
1776 751 54 (In ) 63 SB
1839 751 176 (versions ) 185 SB
2024 751 41 (of) 41 SB
265 813 169 (RasMol ) 173 SB
438 813 110 (prior ) 114 SB
552 813 54 (to ) 58 SB
610 813 157 (version ) 161 SB
771 813 89 (2.6, ) 94 SB
865 813 74 (the ) 79 SB
944 813 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
965 817 150 (trace) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1115 813 35 (\224 ) 40 SB
1155 813 206 (command ) 211 SB
1366 813 90 (was ) 95 SB
1461 813 259 (synonymous ) 264 SB
1725 813 100 (with ) 105 SB
1830 813 74 (the ) 79 SB
1909 813 156 (RasMol) 156 SB
265 875 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 879 240 (backbone) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
526 875 35 (\224 ) 42 SB
568 875 219 (command, ) 226 SB
794 875 174 (drawing ) 181 SB
975 875 35 (a ) 42 SB
1017 875 162 (straight ) 170 SB
1187 875 83 (line ) 91 SB
1278 875 56 (or ) 64 SB
1342 875 170 (cylinder ) 178 SB
1520 875 178 (between ) 186 SB
1706 875 246 (consecutive ) 254 SB
1960 875 105 (alpha) 105 SB
265 937 148 (carbon ) 162 SB
427 937 204 (positions. ) 218 SB
645 937 13 ( ) 27 SB
672 937 54 (In ) 68 SB
740 937 157 (version ) 171 SB
911 937 89 (2.6, ) 103 SB
1014 937 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1035 941 150 (trace) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1185 937 35 (\224 ) 49 SB
1234 937 99 (now ) 114 SB
1348 937 170 (displays ) 185 SB
1533 937 35 (a ) 50 SB
1583 937 160 (smooth ) 175 SB
1758 937 127 (spline ) 142 SB
1900 937 165 (between) 165 SB
265 999 246 (consecutive ) 250 SB
515 999 118 (alpha ) 122 SB
637 999 148 (carbon ) 153 SB
790 999 204 (positions. ) 209 SB
999 999 13 ( ) 18 SB
1017 999 99 (This ) 104 SB
1121 999 127 (spline ) 132 SB
1253 999 105 (does ) 110 SB
1363 999 78 (not ) 83 SB
1446 999 98 (pass ) 103 SB
1549 999 153 (exactly ) 158 SB
1707 999 169 (through ) 174 SB
1881 999 74 (the ) 79 SB
1960 999 105 (alpha) 105 SB
265 1058 148 (carbon ) 151 SB
416 1058 172 (position ) 176 SB
592 1058 54 (of ) 58 SB
650 1058 103 (each ) 107 SB
757 1058 168 (residue, ) 172 SB
929 1058 77 (but ) 81 SB
1010 1058 159 (follows ) 163 SB
1173 1058 74 (the ) 78 SB
1251 1058 113 (same ) 117 SB
1368 1058 99 (path ) 103 SB
1471 1058 54 (as ) 58 SB
1529 1058 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1550 1062 210 (ribbons) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1760 1058 48 (\224, ) 52 SB
1812 1058 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1833 1062 210 (strands) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
2043 1058 22 (\224) 22 SB
265 1120 84 (and ) 87 SB
352 1120 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
373 1124 240 (cartoons) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
613 1120 48 (\224. ) 51 SB
664 1120 13 ( ) 16 SB
680 1120 13 ( ) 16 SB
696 1120 112 (Note ) 115 SB
811 1120 89 (that ) 92 SB
903 1120 103 (each ) 106 SB
1009 1120 155 (residue ) 158 SB
1167 1120 95 (may ) 98 SB
1265 1120 59 (be ) 62 SB
1327 1120 198 (displayed ) 201 SB
1528 1120 54 (as ) 58 SB
1586 1120 125 (either ) 129 SB
1715 1120 35 (a ) 39 SB
1754 1120 153 (ribbon, ) 157 SB
1911 1120 154 (strands,) 154 SB
265 1182 692 (cartoon or trace, and enabling one ) 693 SB
958 1182 54 (of ) 55 SB
1013 1182 115 (these ) 116 SB
1129 1182 295 (representation ) 296 SB
1425 1182 168 (disables ) 169 SB
1594 1182 74 (the ) 75 SB
1669 1182 149 (others. ) 150 SB
1819 1182 13 ( ) 14 SB
1833 1182 209 (However, ) 210 SB
2043 1182 22 (a) 22 SB
265 1241 1366 (residue may be displayed simultaneously as backbone and one of the ) 1367 SB
1632 1241 131 (above ) 132 SB
1764 1241 301 (representations) 301 SB
265 1300 1096 ([though this may change in future versions of RasMol].) 1096 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1418 516 ([2.5]  Distance Monitors) 516 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 1477 169 (RasMol ) 175 SB
440 1477 99 (now ) 105 SB
545 1477 140 (allows ) 146 SB
691 1477 74 (the ) 80 SB
771 1477 151 (display ) 157 SB
928 1477 54 (of ) 60 SB
988 1477 190 (\221distance ) 196 SB
1184 1477 218 (monitors\222. ) 224 SB
1408 1477 13 ( ) 19 SB
1427 1477 48 (A ) 54 SB
1481 1477 174 (distance ) 180 SB
1661 1477 170 (monitor ) 176 SB
1837 1477 44 (is ) 50 SB
1887 1477 35 (a ) 41 SB
1928 1477 137 (dashed) 137 SB
265 1536 175 (\(dotted\) ) 188 SB
453 1536 83 (line ) 96 SB
549 1536 178 (between ) 192 SB
741 1536 59 (an ) 73 SB
814 1536 182 (arbitrary ) 196 SB
1010 1536 89 (pair ) 103 SB
1113 1536 54 (of ) 68 SB
1181 1536 145 (atoms, ) 159 SB
1340 1536 210 (optionally ) 224 SB
1564 1536 164 (labelled ) 178 SB
1742 1536 60 (by ) 74 SB
1816 1536 74 (the ) 88 SB
1904 1536 161 (distance) 161 SB
265 1595 178 (between ) 180 SB
445 1595 124 (them. ) 126 SB
571 1595 13 ( ) 15 SB
586 1595 90 (The ) 92 SB
678 1595 169 (RasMol ) 171 SB
849 1595 206 (command ) 208 SB
1057 1595 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1078 1599 240 (monitor ) 242 SB
1320 1599 270 ( ) 272 SB
1592 1599 240 () 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1832 1595 35 (\224 ) 37 SB
1869 1595 104 (adds ) 106 SB
1975 1595 90 (such) 90 SB
265 1657 35 (a ) 38 SB
303 1657 174 (distance ) 177 SB
480 1657 170 (monitor ) 174 SB
654 1657 178 (between ) 182 SB
836 1657 74 (the ) 78 SB
914 1657 90 (two ) 94 SB
1008 1657 132 (atoms ) 136 SB
1144 1657 187 (specified ) 191 SB
1335 1657 60 (by ) 64 SB
1399 1657 74 (the ) 78 SB
1477 1657 113 (atom ) 117 SB
1594 1657 117 (serial ) 121 SB
1715 1657 181 (numbers ) 185 SB
1900 1657 120 (given ) 124 SB
2024 1657 41 (as) 41 SB
265 1716 915 (parameters.  Distance monitors are turned off ) 916 SB
1181 1716 100 (with ) 101 SB
1282 1716 74 (the ) 75 SB
1357 1716 206 (command ) 207 SB
1564 1716 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1585 1720 270 (monitors ) 271 SB
1856 1720 90 (off) 90 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1946 1716 48 (\224. ) 49 SB
1995 1716 13 ( ) 14 SB
2009 1716 56 (By) 56 SB
265 1778 928 (default, monitors display the distance between ) 929 SB
1194 1778 59 (its ) 60 SB
1254 1778 90 (two ) 91 SB
1345 1778 84 (end ) 85 SB
1430 1778 134 (points ) 135 SB
1565 1778 54 (as ) 55 SB
1620 1778 35 (a ) 36 SB
1656 1778 105 (label ) 106 SB
1762 1778 50 (at ) 51 SB
1813 1778 74 (the ) 75 SB
1888 1778 135 (centre ) 136 SB
2024 1778 41 (of) 41 SB
265 1837 74 (the ) 92 SB
357 1837 183 (monitor. ) 202 SB
559 1837 13 ( ) 32 SB
591 1837 131 (These ) 150 SB
741 1837 174 (distance ) 193 SB
934 1837 124 (labels ) 143 SB
1077 1837 95 (may ) 114 SB
1191 1837 59 (be ) 78 SB
1269 1837 141 (turned ) 160 SB
1429 1837 69 (off ) 88 SB
1517 1837 100 (with ) 119 SB
1636 1837 74 (the ) 93 SB
1729 1837 206 (command ) 225 SB
1954 1837 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1975 1841 90 (set) 90 SB
265 1903 270 (monitors ) 277 SB
542 1903 90 (off) 90 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
632 1899 48 (\224, ) 56 SB
688 1899 84 (and ) 92 SB
780 1899 220 (re-enabled ) 228 SB
1008 1899 100 (with ) 108 SB
1116 1899 74 (the ) 82 SB
1198 1899 206 (command ) 214 SB
1412 1899 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1433 1903 120 (set ) 128 SB
1561 1903 270 (monitors ) 278 SB
1839 1903 60 (on) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1899 1899 48 (\224. ) 56 SB
1955 1899 13 ( ) 21 SB
1976 1899 89 (Like) 89 SB
265 1961 110 (most ) 117 SB
382 1961 117 (other ) 124 SB
506 1961 314 (representations ) 321 SB
827 1961 74 (the ) 81 SB
908 1961 141 (colour ) 148 SB
1056 1961 54 (of ) 61 SB
1117 1961 35 (a ) 42 SB
1159 1961 170 (monitor ) 178 SB
1337 1961 44 (is ) 52 SB
1389 1961 121 (taken ) 129 SB
1518 1961 108 (from ) 116 SB
1634 1961 74 (the ) 82 SB
1716 1961 141 (colour ) 149 SB
1865 1961 54 (of ) 62 SB
1927 1961 59 (its ) 67 SB
1994 1961 71 (end) 71 SB
265 2020 134 (points ) 135 SB
400 2020 134 (unless ) 135 SB
535 2020 187 (specified ) 188 SB
723 2020 60 (by ) 61 SB
784 2020 74 (the ) 75 SB
859 2020 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
880 2024 210 (colour ) 212 SB
1092 2024 240 (monitors) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1332 2020 35 (\224 ) 37 SB
1369 2020 219 (command. ) 221 SB
1590 2020 13 ( ) 15 SB
1605 2020 185 (Distance ) 187 SB
1792 2020 189 (monitors ) 191 SB
1983 2020 82 (may) 82 SB
265 2082 1302 (also be added to a molecule using a mouse as described in section) 1302 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2200 1023 ([2.6] Dashed Wireframe, Backbone and Strands) 1023 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2259 236 (Wireframe, ) 248 SB
513 2259 202 (backbone ) 214 SB
727 2259 84 (and ) 96 SB
823 2259 154 (strands ) 166 SB
989 2259 314 (representations ) 326 SB
1315 2259 95 (may ) 107 SB
1422 2259 99 (now ) 111 SB
1533 2259 59 (be ) 71 SB
1604 2259 198 (displayed ) 211 SB
1815 2259 100 (with ) 113 SB
1928 2259 137 (dashed) 137 SB
265 2318 175 (\(dotted\) ) 179 SB
444 2318 115 (lines. ) 119 SB
563 2318 13 ( ) 17 SB
580 2318 99 (This ) 103 SB
683 2318 44 (is ) 48 SB
731 2318 164 (enabled ) 168 SB
899 2318 60 (by ) 64 SB
963 2318 182 (allowing ) 186 SB
1149 2318 74 (the ) 78 SB
1227 2318 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1248 2322 120 (dash) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1368 2318 35 (\224 ) 39 SB
1407 2318 56 (or ) 61 SB
1468 2318 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1489 2322 180 (dashes) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1669 2318 35 (\224 ) 40 SB
1709 2318 231 (parameters ) 236 SB
1945 2318 54 (to ) 59 SB
2004 2318 61 (the) 61 SB
265 2380 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 2384 270 (wireframe) 270 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
556 2380 69 (\224, \223) 69 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
625 2384 240 (backbone) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
865 2380 140 (\224 and \223) 140 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1005 2384 210 (strands) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1215 2380 260 (\224 commands.) 260 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2501 821 ([2.7]  Single Letter Amino Acid Labels) 821 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2560 90 (The ) 94 SB
359 2560 145 (format ) 149 SB
508 2560 179 (specifier ) 183 SB
691 2560 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
712 2564 60 (%m) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
772 2560 35 (\224 ) 39 SB
811 2560 78 (has ) 82 SB
893 2560 105 (been ) 109 SB
1002 2560 132 (added ) 136 SB
1138 2560 54 (to ) 58 SB
1196 2560 144 (strings ) 148 SB
1344 2560 49 (in ) 53 SB
1397 2560 74 (the ) 78 SB
1475 2560 169 (RasMol ) 173 SB
1648 2560 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1669 2564 150 (label) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1819 2560 35 (\224 ) 40 SB
1859 2560 206 (command.) 206 SB
265 2622 99 (This ) 101 SB
366 2622 140 (allows ) 142 SB
508 2622 134 (amino ) 136 SB
644 2622 94 (acid ) 96 SB
740 2622 174 (residues ) 176 SB
916 2622 54 (to ) 56 SB
972 2622 59 (be ) 61 SB
1033 2622 164 (labelled ) 167 SB
1200 2622 100 (with ) 103 SB
1303 2622 35 (a ) 38 SB
1341 2622 127 (single ) 130 SB
1471 2622 116 (letter ) 119 SB
1590 2622 134 (amino ) 137 SB
1727 2622 94 (acid ) 97 SB
1824 2622 121 (code, ) 124 SB
1948 2622 117 (rather) 117 SB
265 2681 98 (than ) 103 SB
368 2681 74 (the ) 79 SB
447 2681 113 (three ) 118 SB
565 2681 116 (letter ) 121 SB
686 2681 134 (amino ) 140 SB
826 2681 94 (acid ) 100 SB
926 2681 108 (code ) 114 SB
1040 2681 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1061 2685 60 (%n) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1121 2681 48 (\224. ) 54 SB
1175 2681 13 ( ) 19 SB
1194 2681 83 (For ) 89 SB
1283 2681 190 (example, ) 196 SB
1479 2681 68 (try ) 74 SB
1553 2681 74 (the ) 80 SB
1633 2681 225 (commands ) 231 SB
1864 2681 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1885 2685 180 (select) 180 SB
265 2747 150 (alpha) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
415 2743 140 (\224 and \223) 140 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
555 2747 360 (label \223%m%r\224) 360 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
915 2743 35 (\224.) 35 SB
1 #C
statusdict begin /manualfeed false store end
EJ RS
%%PageTrailer
%%PageResources: font Courier
%%+ font Courier-Bold
%%+ font Times-Bold
%%+ font Times-Roman
%%Page: 3 3
%%PageResources: (atend)
SS
0 0 25 31 776 1169 300 SM
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
0 0 0 fC
265 209 364 ([2.8] Axes Labels) 364 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 268 169 (RasMol ) 172 SB
437 268 99 (now ) 102 SB
539 268 170 (displays ) 173 SB
712 268 74 (the ) 77 SB
789 268 215 (characters ) 218 SB
1007 268 62 (X, ) 65 SB
1072 268 49 (Y ) 52 SB
1124 268 84 (and ) 87 SB
1211 268 43 (Z ) 46 SB
1257 268 63 (on ) 67 SB
1324 268 74 (the ) 78 SB
1402 268 188 (cartesian ) 192 SB
1594 268 100 (axes ) 104 SB
1698 268 198 (displayed ) 202 SB
1900 268 100 (with ) 104 SB
2004 268 61 (the) 61 SB
265 327 206 (command ) 210 SB
475 327 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
496 331 120 (set ) 124 SB
620 331 150 (axes ) 154 SB
774 331 60 (on) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
834 327 48 (\224. ) 52 SB
886 327 13 ( ) 17 SB
903 327 131 (These ) 135 SB
1038 327 135 (letters ) 139 SB
1177 327 105 (label ) 109 SB
1286 327 74 (the ) 78 SB
1364 327 168 (positive ) 172 SB
1536 327 188 (direction ) 192 SB
1728 327 54 (of ) 58 SB
1786 327 74 (the ) 79 SB
1865 327 200 (respective) 200 SB
265 389 90 (axis.) 90 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 566 587 ([3]  USER INTERACTION) 587 SB
265 684 851 ([3.1]  Enabling/Disabling Atom Picking.) 851 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 743 453 (In versions of RasMol ) 454 SB
719 743 110 (prior ) 111 SB
830 743 54 (to ) 55 SB
885 743 157 (version ) 158 SB
1043 743 89 (2.6, ) 90 SB
1133 743 167 (clicking ) 168 SB
1301 743 63 (on ) 64 SB
1365 743 59 (an ) 60 SB
1425 743 113 (atom ) 114 SB
1539 743 100 (with ) 101 SB
1640 743 74 (the ) 75 SB
1715 743 142 (mouse ) 143 SB
1858 743 170 (resulted ) 171 SB
2029 743 36 (in) 36 SB
265 802 674 (it identification and the display of ) 675 SB
940 802 40 (it ) 41 SB
981 802 155 (residue ) 156 SB
1137 802 131 (name, ) 132 SB
1269 802 155 (residue ) 156 SB
1425 802 175 (number, ) 176 SB
1601 802 113 (atom ) 114 SB
1715 802 131 (name, ) 132 SB
1847 802 113 (atom ) 114 SB
1961 802 104 (serial) 104 SB
265 861 162 (number ) 170 SB
435 861 84 (and ) 92 SB
527 861 117 (chain ) 125 SB
652 861 49 (in ) 57 SB
709 861 74 (the ) 82 SB
791 861 206 (command ) 214 SB
1005 861 185 (window. ) 193 SB
1198 861 13 ( ) 21 SB
1219 861 99 (This ) 107 SB
1326 861 209 (behaviour ) 217 SB
1543 861 95 (may ) 103 SB
1646 861 59 (be ) 67 SB
1713 861 174 (disabled ) 182 SB
1895 861 100 (with ) 109 SB
2004 861 61 (the) 61 SB
265 920 206 (command ) 212 SB
477 920 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
498 924 120 (set ) 126 SB
624 924 240 (picking ) 246 SB
870 924 120 (none) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
990 920 35 (\224 ) 42 SB
1032 920 84 (and ) 91 SB
1123 920 176 (restored ) 183 SB
1306 920 100 (with ) 107 SB
1413 920 74 (the ) 81 SB
1494 920 206 (command ) 213 SB
1707 920 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1728 924 120 (set ) 127 SB
1855 924 210 (picking) 210 SB
265 986 150 (ident) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
415 982 48 (\224. ) 51 SB
466 982 13 ( ) 16 SB
482 982 199 (Disabling ) 202 SB
684 982 158 (picking ) 161 SB
845 982 44 (is ) 47 SB
892 982 131 (useful ) 135 SB
1027 982 119 (when ) 123 SB
1150 982 204 (executing ) 208 SB
1358 982 74 (the ) 78 SB
1436 982 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1457 986 150 (pause) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1607 982 35 (\224 ) 39 SB
1646 982 206 (command ) 210 SB
1856 982 49 (in ) 53 SB
1909 982 156 (RasMol) 156 SB
265 1044 142 (scripts ) 143 SB
408 1044 54 (as ) 55 SB
463 1044 40 (it ) 41 SB
504 1044 181 (prevents ) 182 SB
686 1044 74 (the ) 75 SB
761 1044 151 (display ) 152 SB
913 1044 54 (of ) 55 SB
968 1044 181 (spurious ) 182 SB
1150 1044 179 (message ) 180 SB
1330 1044 63 (on ) 64 SB
1394 1044 74 (the ) 75 SB
1469 1044 206 (command ) 207 SB
1676 1044 83 (line ) 84 SB
1760 1044 119 (whist ) 120 SB
1880 1044 74 (the ) 75 SB
1955 1044 110 (script) 110 SB
265 1103 263 (is suspended.) 263 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1221 1028 ([3.2] Measuring Distances, Angles and Torsions.) 1028 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 1280 54 (In ) 60 SB
325 1280 174 (addition ) 180 SB
505 1280 54 (to ) 60 SB
565 1280 178 (enabling ) 184 SB
749 1280 84 (and ) 90 SB
839 1280 188 (disabling ) 194 SB
1033 1280 171 (picking, ) 177 SB
1210 1280 169 (RasMol ) 175 SB
1385 1280 157 (version ) 163 SB
1548 1280 76 (2.6 ) 82 SB
1630 1280 140 (allows ) 147 SB
1777 1280 74 (the ) 81 SB
1858 1280 207 (interactive) 207 SB
265 1339 275 (measurement ) 281 SB
546 1339 54 (of ) 60 SB
606 1339 206 (distances, ) 212 SB
818 1339 137 (angles ) 143 SB
961 1339 84 (and ) 90 SB
1051 1339 184 (torsions. ) 191 SB
1242 1339 13 ( ) 20 SB
1262 1339 99 (This ) 106 SB
1368 1339 260 (functionality ) 267 SB
1635 1339 44 (is ) 51 SB
1686 1339 186 (achieved ) 193 SB
1879 1339 118 (using ) 125 SB
2004 1339 61 (the) 61 SB
265 1398 225 (commands ) 243 SB
508 1398 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
529 1402 120 (set ) 138 SB
667 1402 240 (picking ) 258 SB
925 1402 240 (distance) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1165 1398 48 (\224, ) 66 SB
1231 1398 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1252 1402 120 (set ) 138 SB
1390 1402 240 (picking ) 258 SB
1648 1402 150 (angle) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1798 1398 35 (\224 ) 53 SB
1851 1398 84 (and ) 103 SB
1954 1398 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1975 1402 90 (set) 90 SB
265 1464 240 (picking ) 246 SB
511 1464 210 (torsion) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
721 1460 35 (\224 ) 41 SB
762 1460 261 (respectively. ) 267 SB
1029 1460 13 ( ) 19 SB
1048 1460 13 ( ) 19 SB
1067 1460 54 (In ) 60 SB
1127 1460 115 (these ) 121 SB
1248 1460 155 (modes, ) 161 SB
1409 1460 167 (clicking ) 173 SB
1582 1460 63 (on ) 69 SB
1651 1460 59 (an ) 65 SB
1716 1460 113 (atom ) 119 SB
1835 1460 142 (results ) 148 SB
1983 1460 49 (in ) 55 SB
2038 1460 27 (it) 27 SB
265 1522 120 (being ) 122 SB
387 1522 197 (identified ) 199 SB
586 1522 63 (on ) 65 SB
651 1522 74 (the ) 76 SB
727 1522 146 (rasmol ) 148 SB
875 1522 206 (command ) 208 SB
1083 1522 96 (line. ) 98 SB
1181 1522 13 ( ) 15 SB
1196 1522 54 (In ) 56 SB
1252 1522 174 (addition ) 176 SB
1428 1522 121 (every ) 123 SB
1551 1522 113 (atom ) 115 SB
1666 1522 144 (picked ) 147 SB
1813 1522 227 (increments ) 230 SB
2043 1522 22 (a) 22 SB
265 1581 164 (modulo ) 174 SB
439 1581 164 (counter ) 175 SB
614 1581 103 (such ) 114 SB
728 1581 89 (that ) 100 SB
828 1581 49 (in ) 60 SB
888 1581 174 (distance ) 185 SB
1073 1581 136 (mode, ) 147 SB
1220 1581 121 (every ) 132 SB
1352 1581 151 (second ) 162 SB
1514 1581 113 (atom ) 124 SB
1638 1581 170 (displays ) 181 SB
1819 1581 74 (the ) 85 SB
1904 1581 161 (distance) 161 SB
265 1640 178 (between ) 185 SB
450 1640 83 (this ) 90 SB
540 1640 113 (atom ) 120 SB
660 1640 84 (and ) 91 SB
751 1640 74 (the ) 82 SB
833 1640 183 (previous ) 191 SB
1024 1640 98 (one. ) 106 SB
1130 1640 54 (In ) 62 SB
1192 1640 118 (angle ) 126 SB
1318 1640 136 (mode, ) 144 SB
1462 1640 121 (every ) 129 SB
1591 1640 106 (third ) 114 SB
1705 1640 113 (atom ) 121 SB
1826 1640 170 (displays ) 178 SB
2004 1640 61 (the) 61 SB
265 1699 118 (angle ) 123 SB
388 1699 178 (between ) 183 SB
571 1699 74 (the ) 79 SB
650 1699 183 (previous ) 188 SB
838 1699 113 (three ) 118 SB
956 1699 132 (atoms ) 137 SB
1093 1699 84 (and ) 89 SB
1182 1699 49 (in ) 54 SB
1236 1699 152 (torsion ) 157 SB
1393 1699 123 (mode ) 128 SB
1521 1699 121 (every ) 127 SB
1648 1699 135 (fourth ) 141 SB
1789 1699 113 (atom ) 119 SB
1908 1699 157 (displays) 157 SB
265 1758 74 (the ) 77 SB
342 1758 152 (torsion ) 155 SB
497 1758 178 (between ) 181 SB
678 1758 74 (the ) 77 SB
755 1758 81 (last ) 84 SB
839 1758 96 (four ) 99 SB
938 1758 145 (atoms. ) 148 SB
1086 1758 13 ( ) 16 SB
1102 1758 69 (By ) 72 SB
1174 1758 161 (holding ) 165 SB
1339 1758 124 (down ) 128 SB
1467 1758 74 (the ) 78 SB
1545 1758 98 (shift ) 102 SB
1647 1758 83 (key ) 87 SB
1734 1758 119 (while ) 123 SB
1857 1758 158 (picking ) 162 SB
2019 1758 46 (an) 46 SB
265 1817 126 (atom, ) 134 SB
399 1817 83 (this ) 91 SB
490 1817 164 (modulo ) 172 SB
662 1817 164 (counter ) 172 SB
834 1817 99 (isn\222t ) 107 SB
941 1817 255 (incremented ) 264 SB
1205 1817 84 (and ) 93 SB
1298 1817 153 (allows, ) 162 SB
1460 1817 71 (for ) 80 SB
1540 1817 190 (example, ) 199 SB
1739 1817 74 (the ) 83 SB
1822 1817 193 (distances ) 202 SB
2024 1817 41 (of) 41 SB
265 1876 1056 (consecutive atoms from a fixed atom to be displayed.) 1056 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1994 831 ([3.3]  Labelling Atoms with the Mouse.) 831 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2053 90 (The ) 91 SB
356 2053 142 (mouse ) 143 SB
499 2053 95 (may ) 97 SB
596 2053 92 (also ) 94 SB
690 2053 59 (be ) 61 SB
751 2053 104 (used ) 106 SB
857 2053 54 (to ) 56 SB
913 2053 138 (toggle ) 140 SB
1053 2053 74 (the ) 76 SB
1129 2053 151 (display ) 153 SB
1282 2053 54 (of ) 56 SB
1338 2053 59 (an ) 61 SB
1399 2053 113 (atom ) 115 SB
1514 2053 105 (label ) 107 SB
1621 2053 63 (on ) 65 SB
1686 2053 35 (a ) 37 SB
1723 2053 120 (given ) 122 SB
1845 2053 126 (atom. ) 128 SB
1973 2053 13 ( ) 15 SB
1988 2053 77 (The) 77 SB
265 2112 169 (RasMol ) 174 SB
439 2112 206 (command ) 211 SB
650 2112 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
671 2116 120 (set ) 125 SB
796 2116 240 (picking ) 245 SB
1041 2116 150 (label) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1191 2112 35 (\224 ) 40 SB
1231 2112 180 (removes ) 185 SB
1416 2112 35 (a ) 41 SB
1457 2112 105 (label ) 111 SB
1568 2112 108 (from ) 114 SB
1682 2112 35 (a ) 41 SB
1723 2112 144 (picked ) 150 SB
1873 2112 113 (atom ) 119 SB
1992 2112 40 (if ) 46 SB
2038 2112 27 (it) 27 SB
265 2174 1488 (already has one, or displays a concise label at that atom position otherwise.) 1488 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2292 1044 ([3.5]  Adding Distance Monitors with the Mouse.) 1044 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2351 169 (RasMol ) 172 SB
437 2351 157 (version ) 160 SB
597 2351 76 (2.6 ) 80 SB
677 2351 92 (also ) 96 SB
773 2351 140 (allows ) 144 SB
917 2351 74 (the ) 78 SB
995 2351 220 (interactive ) 224 SB
1219 2351 174 (addition ) 178 SB
1397 2351 54 (of ) 58 SB
1455 2351 174 (distance ) 178 SB
1633 2351 189 (monitors ) 193 SB
1826 2351 54 (to ) 58 SB
1884 2351 59 (an ) 63 SB
1947 2351 118 (image) 118 SB
265 2410 118 (using ) 124 SB
389 2410 74 (the ) 80 SB
469 2410 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
490 2414 120 (set ) 126 SB
616 2414 240 (picking ) 246 SB
862 2414 210 (monitor) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1072 2410 35 (\224 ) 41 SB
1113 2410 219 (command. ) 225 SB
1338 2410 13 ( ) 19 SB
1357 2410 90 (The ) 96 SB
1453 2410 209 (behaviour ) 215 SB
1668 2410 54 (of ) 61 SB
1729 2410 74 (the ) 81 SB
1810 2410 142 (mouse ) 149 SB
1959 2410 106 (when) 106 SB
265 2472 1054 (picking in monitor mode is similar to that in distance ) 1055 SB
1320 2472 123 (mode ) 124 SB
1444 2472 201 (described ) 202 SB
1646 2472 144 (above. ) 145 SB
1791 2472 13 ( ) 14 SB
1805 2472 90 (The ) 91 SB
1896 2472 98 (shift ) 99 SB
1995 2472 70 (key) 70 SB
265 2531 95 (may ) 103 SB
368 2531 59 (be ) 67 SB
435 2531 104 (used ) 112 SB
547 2531 54 (to ) 62 SB
609 2531 108 (form ) 116 SB
725 2531 174 (distance ) 183 SB
908 2531 189 (monitors ) 198 SB
1106 2531 178 (between ) 187 SB
1293 2531 35 (a ) 44 SB
1337 2531 111 (fixed ) 120 SB
1457 2531 113 (atom ) 122 SB
1579 2531 84 (and ) 93 SB
1672 2531 151 (several ) 160 SB
1832 2531 233 (consecutive) 233 SB
265 2590 204 (positions. ) 205 SB
470 2590 13 ( ) 14 SB
484 2590 48 (A ) 49 SB
533 2590 174 (distance ) 175 SB
708 2590 170 (monitor ) 171 SB
879 2590 95 (may ) 96 SB
975 2590 92 (also ) 93 SB
1068 2590 59 (be ) 60 SB
1128 2590 186 (removed ) 187 SB
1315 2590 197 (\(toggled\) ) 198 SB
1513 2590 60 (by ) 61 SB
1574 2590 186 (selecting ) 187 SB
1761 2590 74 (the ) 76 SB
1837 2590 228 (appropriate) 228 SB
265 2649 89 (pair ) 98 SB
363 2649 54 (of ) 63 SB
426 2649 113 (atom ) 123 SB
549 2649 84 (end ) 94 SB
643 2649 134 (points ) 144 SB
787 2649 35 (a ) 45 SB
832 2649 151 (second ) 161 SB
993 2649 99 (time ) 109 SB
1102 2649 138 (\(much ) 148 SB
1250 2649 84 (like ) 94 SB
1344 2649 178 (labelling ) 188 SB
1532 2649 100 (with ) 110 SB
1642 2649 74 (the ) 84 SB
1726 2649 142 (mouse ) 152 SB
1878 2649 91 (acts ) 101 SB
1979 2649 54 (as ) 64 SB
2043 2649 22 (a) 22 SB
265 2708 155 (toggle\).) 155 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2826 892 ([3.4]  Centering Rotation with the Mouse.) 892 SB
1 #C
statusdict begin /manualfeed false store end
EJ RS
%%PageTrailer
%%PageResources: font Courier-Bold
%%+ font Times-Bold
%%+ font Times-Roman
%%Page: 4 4
%%PageResources: (atend)
SS
0 0 25 31 776 1169 300 SM
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
0 0 0 fC
265 209 667 (A molecule may also be centered ) 668 SB
933 209 63 (on ) 64 SB
997 209 35 (a ) 36 SB
1033 209 187 (specified ) 188 SB
1221 209 113 (atom ) 114 SB
1335 209 172 (position ) 173 SB
1508 209 118 (using ) 119 SB
1627 209 74 (the ) 75 SB
1702 209 169 (RasMol ) 170 SB
1872 209 193 (command) 193 SB
265 268 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 272 120 (set ) 124 SB
410 272 240 (picking ) 244 SB
654 272 180 (centre) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
834 268 35 (\224 ) 39 SB
873 268 56 (or ) 60 SB
933 268 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
954 272 120 (set ) 124 SB
1078 272 240 (picking ) 244 SB
1322 272 180 (center) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1502 268 48 (\224. ) 52 SB
1554 268 13 ( ) 17 SB
1571 268 54 (In ) 58 SB
1629 268 83 (this ) 87 SB
1716 268 136 (mode, ) 140 SB
1856 268 158 (picking ) 163 SB
2019 268 46 (an) 46 SB
265 330 1076 (atom causes all futher rotations to be about that point.) 1076 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 507 669 ([4]  COMMAND INTERFACE) 669 SB
265 625 511 ([4.1] Refresh Command) 511 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 684 317 (The command \223) 317 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
582 688 210 (refresh) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
792 684 1273 (\224 has been added to the RasMol command language to force the) 1273 SB
265 746 151 (display ) 162 SB
427 746 54 (of ) 65 SB
492 746 74 (the ) 85 SB
577 746 155 (current ) 166 SB
743 746 144 (image. ) 155 SB
898 746 13 ( ) 24 SB
922 746 99 (This ) 110 SB
1032 746 44 (is ) 55 SB
1087 746 219 (performed ) 230 SB
1317 746 278 (automatically ) 289 SB
1606 746 63 (on ) 74 SB
1680 746 74 (the ) 85 SB
1765 746 206 (command ) 217 SB
1982 746 83 (line.) 83 SB
265 805 209 (However, ) 211 SB
476 805 74 (the ) 76 SB
552 805 205 (semantics ) 207 SB
759 805 54 (of ) 56 SB
815 805 35 (a ) 37 SB
852 805 169 (RasMol ) 171 SB
1023 805 123 (script ) 125 SB
1148 805 74 (file ) 76 SB
1224 805 74 (are ) 76 SB
1300 805 89 (that ) 91 SB
1391 805 59 (all ) 61 SB
1452 805 54 (of ) 56 SB
1508 805 74 (the ) 76 SB
1584 805 225 (commands ) 227 SB
1811 805 74 (are ) 77 SB
1888 805 177 (executed) 177 SB
265 864 246 (sequentially ) 252 SB
517 864 84 (and ) 90 SB
607 864 74 (the ) 80 SB
687 864 131 (image ) 137 SB
824 864 63 (on ) 69 SB
893 864 74 (the ) 80 SB
973 864 139 (screen ) 145 SB
1118 864 44 (is ) 50 SB
1168 864 98 (only ) 105 SB
1273 864 172 (updated ) 179 SB
1452 864 104 (after ) 111 SB
1563 864 59 (all ) 66 SB
1629 864 225 (commands ) 232 SB
1861 864 105 (have ) 112 SB
1973 864 92 (been) 92 SB
265 923 422 (executed.  The new \223) 422 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
687 927 210 (refresh) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
897 923 606 (\224 command  allows a script to ) 607 SB
1504 923 151 (display ) 152 SB
1656 923 258 (intermediate ) 259 SB
1915 923 113 (steps ) 114 SB
2029 923 36 (in) 36 SB
265 985 74 (the ) 75 SB
340 985 201 (rendering ) 202 SB
542 985 176 (process. ) 177 SB
719 985 13 ( ) 15 SB
734 985 95 (One ) 97 SB
831 985 172 (possible ) 174 SB
1005 985 230 (application ) 232 SB
1237 985 54 (of ) 56 SB
1293 985 83 (this ) 85 SB
1378 985 44 (is ) 46 SB
1424 985 49 (in ) 51 SB
1475 985 74 (the ) 76 SB
1551 985 230 (production ) 232 SB
1783 985 54 (of ) 56 SB
1839 985 226 (animations,) 226 SB
265 1044 184 (however ) 188 SB
453 1044 74 (the ) 78 SB
531 1044 117 (delay ) 122 SB
653 1044 178 (between ) 183 SB
836 1044 219 (successive ) 224 SB
1060 1044 145 (frames ) 150 SB
1210 1044 44 (is ) 49 SB
1259 1044 217 (dependent ) 222 SB
1481 1044 113 (upon ) 118 SB
1599 1044 74 (the ) 79 SB
1678 1044 262 (performance ) 267 SB
1945 1044 54 (of ) 59 SB
2004 1044 61 (the) 61 SB
265 1103 509 (machine running RasMol.) 509 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1221 604 ([4.2]  Pause/Wait Command) 604 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 1280 224 (Potentially ) 234 SB
499 1280 85 (one ) 95 SB
594 1280 54 (of ) 64 SB
658 1280 74 (the ) 84 SB
742 1280 110 (most ) 120 SB
862 1280 131 (useful ) 141 SB
1003 1280 193 (additions ) 203 SB
1206 1280 54 (to ) 64 SB
1270 1280 74 (the ) 84 SB
1354 1280 169 (RasMol ) 179 SB
1533 1280 206 (command ) 216 SB
1749 1280 190 (language ) 200 SB
1949 1280 44 (is ) 55 SB
2004 1280 61 (the) 61 SB
265 1339 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 1343 150 (pause) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
436 1339 367 (\224 \(synonymously \223) 367 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
803 1343 120 (wait) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
923 1339 684 (\224\) command.  This command may ) 685 SB
1608 1339 59 (be ) 60 SB
1668 1339 190 (executed ) 191 SB
1859 1339 49 (in ) 50 SB
1909 1339 156 (RasMol) 156 SB
265 1401 123 (script ) 136 SB
401 1401 93 (files ) 106 SB
507 1401 54 (to ) 67 SB
574 1401 172 (suspend ) 185 SB
759 1401 74 (the ) 87 SB
846 1401 211 (sequential ) 224 SB
1070 1401 205 (execution ) 218 SB
1288 1401 54 (of ) 67 SB
1355 1401 225 (commands ) 238 SB
1593 1401 84 (and ) 98 SB
1691 1401 121 (allow ) 135 SB
1826 1401 74 (the ) 88 SB
1914 1401 96 (user ) 110 SB
2024 1401 41 (to) 41 SB
265 1460 176 (examine ) 178 SB
443 1460 74 (the ) 76 SB
519 1460 155 (current ) 157 SB
676 1460 144 (image. ) 146 SB
822 1460 13 ( ) 15 SB
837 1460 129 (When ) 131 SB
968 1460 169 (RasMol ) 171 SB
1139 1460 184 (executes ) 186 SB
1325 1460 35 (a ) 37 SB
1362 1460 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1383 1464 150 (pause) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1533 1460 35 (\224 ) 37 SB
1570 1460 206 (command ) 208 SB
1778 1460 49 (in ) 51 SB
1829 1460 35 (a ) 37 SB
1866 1460 123 (script ) 125 SB
1991 1460 74 (file,) 74 SB
265 1522 40 (it ) 43 SB
308 1522 191 (suspends ) 194 SB
502 1522 205 (execution ) 208 SB
710 1522 54 (of ) 57 SB
767 1522 74 (the ) 77 SB
844 1522 86 (rest ) 89 SB
933 1522 54 (of ) 57 SB
990 1522 74 (the ) 77 SB
1067 1522 87 (file, ) 90 SB
1157 1522 190 (refreshes ) 193 SB
1350 1522 74 (the ) 77 SB
1427 1522 131 (image ) 135 SB
1562 1522 63 (on ) 67 SB
1629 1522 74 (the ) 78 SB
1707 1522 139 (screen ) 143 SB
1850 1522 84 (and ) 88 SB
1938 1522 127 (allows) 127 SB
265 1581 74 (the ) 80 SB
345 1581 269 (manipulation ) 275 SB
620 1581 54 (of ) 60 SB
680 1581 74 (the ) 80 SB
760 1581 131 (image ) 137 SB
897 1581 118 (using ) 124 SB
1021 1581 74 (the ) 80 SB
1101 1581 142 (mouse ) 148 SB
1249 1581 84 (and ) 90 SB
1339 1581 121 (scroll ) 127 SB
1466 1581 108 (bars. ) 114 SB
1580 1581 13 ( ) 19 SB
1599 1581 117 (Once ) 123 SB
1722 1581 35 (a ) 41 SB
1763 1581 83 (key ) 89 SB
1852 1581 44 (is ) 51 SB
1903 1581 162 (pressed,) 162 SB
265 1640 155 (control ) 161 SB
426 1640 152 (returns ) 158 SB
584 1640 54 (to ) 60 SB
644 1640 74 (the ) 80 SB
724 1640 123 (script ) 129 SB
853 1640 74 (file ) 80 SB
933 1640 50 (at ) 56 SB
989 1640 74 (the ) 80 SB
1069 1640 83 (line ) 90 SB
1159 1640 201 (following ) 208 SB
1367 1640 74 (the ) 81 SB
1448 1640 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1469 1644 150 (pause) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1619 1640 35 (\224 ) 42 SB
1661 1640 219 (command. ) 226 SB
1887 1640 13 ( ) 20 SB
1907 1640 129 (While ) 136 SB
2043 1640 22 (a) 22 SB
265 1702 123 (script ) 125 SB
390 1702 44 (is ) 46 SB
436 1702 219 (suspended ) 221 SB
657 1702 74 (the ) 76 SB
733 1702 191 (molecule ) 193 SB
926 1702 95 (may ) 97 SB
1023 1702 59 (be ) 61 SB
1084 1702 168 (rotated, ) 170 SB
1254 1702 219 (translated, ) 221 SB
1475 1702 148 (scaled, ) 151 SB
1626 1702 161 (slabbed ) 164 SB
1790 1702 84 (and ) 87 SB
1877 1702 144 (picked ) 147 SB
2024 1702 41 (as) 41 SB
265 1761 164 (normal, ) 169 SB
434 1761 77 (but ) 82 SB
516 1761 59 (all ) 64 SB
580 1761 121 (menu ) 126 SB
706 1761 225 (commands ) 230 SB
936 1761 74 (are ) 79 SB
1015 1761 187 (disabled. ) 192 SB
1207 1761 13 ( ) 18 SB
1225 1761 201 (Currently ) 206 SB
1431 1761 113 (there ) 118 SB
1549 1761 44 (is ) 49 SB
1598 1761 63 (no ) 68 SB
1666 1761 94 (way ) 99 SB
1765 1761 71 (for ) 77 SB
1842 1761 74 (the ) 80 SB
1922 1761 96 (user ) 102 SB
2024 1761 41 (to) 41 SB
265 1820 185 (interrupt ) 186 SB
451 1820 74 (the ) 75 SB
526 1820 205 (execution ) 206 SB
732 1820 54 (of ) 55 SB
787 1820 35 (a ) 36 SB
823 1820 123 (script ) 124 SB
947 1820 60 (by ) 61 SB
1008 1820 137 (typing ) 138 SB
1146 1820 205 (control-C ) 206 SB
1352 1820 56 (or ) 57 SB
1409 1820 176 (pressing ) 177 SB
1586 1820 158 (escape, ) 159 SB
1745 1820 152 (though ) 153 SB
1898 1820 83 (this ) 85 SB
1983 1820 82 (may) 82 SB
265 1879 59 (be ) 70 SB
335 1879 132 (added ) 143 SB
478 1879 49 (in ) 60 SB
538 1879 132 (future ) 143 SB
681 1879 176 (versions ) 187 SB
868 1879 54 (of ) 65 SB
933 1879 182 (RasMol. ) 193 SB
1126 1879 13 ( ) 24 SB
1150 1879 13 ( ) 24 SB
1174 1879 90 (The ) 101 SB
1275 1879 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1296 1883 150 (pause) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1446 1879 35 (\224 ) 46 SB
1492 1879 81 (can ) 92 SB
1584 1879 186 (probably ) 197 SB
1781 1879 59 (be ) 71 SB
1852 1879 104 (used ) 116 SB
1968 1879 97 (most) 97 SB
265 1941 217 (effectively ) 227 SB
492 1941 100 (with ) 110 SB
602 1941 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
623 1945 120 (echo) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
743 1941 35 (\224 ) 45 SB
788 1941 225 (commands ) 235 SB
1023 1941 49 (in ) 59 SB
1082 1941 206 (education ) 216 SB
1298 1941 251 (pre-scripted ) 261 SB
1559 1941 329 (demonstrations, ) 339 SB
1898 1941 134 (where ) 145 SB
2043 1941 22 (a) 22 SB
265 2003 232 (description ) 234 SB
499 2003 54 (of ) 56 SB
555 2003 74 (the ) 76 SB
631 2003 155 (current ) 157 SB
788 2003 131 (image ) 134 SB
922 2003 44 (is ) 47 SB
969 2003 204 (presented ) 207 SB
1176 2003 54 (to ) 57 SB
1233 2003 74 (the ) 77 SB
1310 2003 268 (user/student. ) 271 SB
1581 2003 13 ( ) 16 SB
1597 2003 195 (Typically ) 198 SB
1795 2003 74 (the ) 77 SB
1872 2003 193 (command) 193 SB
265 2062 195 (before a \223) 195 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
460 2066 150 (pause) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
610 2062 259 (\224 should be \223) 259 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
869 2066 900 (echo Press any key to continue) 900 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1769 2062 35 (\224.) 35 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2183 836 ([4.3]  Controlling Save/Write in Scripts) 836 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2242 95 (One ) 98 SB
363 2242 54 (of ) 57 SB
420 2242 74 (the ) 77 SB
497 2242 214 (unpopular ) 217 SB
714 2242 171 (changes ) 174 SB
888 2242 266 (implemented ) 269 SB
1157 2242 49 (in ) 52 SB
1209 2242 169 (RasMol ) 172 SB
1381 2242 178 (between ) 181 SB
1562 2242 176 (versions ) 179 SB
1741 2242 76 (2.4 ) 79 SB
1820 2242 84 (and ) 88 SB
1908 2242 76 (2.5 ) 80 SB
1988 2242 77 (was) 77 SB
265 2301 74 (the ) 83 SB
348 2301 188 (disabling ) 197 SB
545 2301 54 (of ) 63 SB
608 2301 100 (save ) 109 SB
717 2301 84 (and ) 93 SB
810 2301 115 (write ) 124 SB
934 2301 225 (commands ) 235 SB
1169 2301 108 (from ) 118 SB
1287 2301 136 (within ) 146 SB
1433 2301 169 (RasMol ) 179 SB
1612 2301 123 (script ) 133 SB
1745 2301 106 (files. ) 116 SB
1861 2301 13 ( ) 23 SB
1884 2301 110 (With ) 120 SB
2004 2301 61 (the) 61 SB
265 2360 1425 (increasing use of RasMol in conjunction with the Internet, the ability to ) 1426 SB
1691 2360 374 (generate/overwrite) 374 SB
265 2419 93 (files ) 99 SB
364 2419 90 (was ) 96 SB
460 2419 188 (regarded ) 194 SB
654 2419 54 (as ) 60 SB
714 2419 35 (a ) 41 SB
755 2419 168 (security ) 174 SB
929 2419 177 (hazards. ) 183 SB
1112 2419 13 ( ) 19 SB
1131 2419 126 (Many ) 132 SB
1263 2419 100 (sites ) 106 SB
1369 2419 99 (now ) 105 SB
1474 2419 198 (exchange ) 205 SB
1679 2419 169 (RasMol ) 176 SB
1855 2419 123 (script ) 130 SB
1985 2419 80 (files) 80 SB
265 2478 89 (that ) 102 SB
367 2478 123 (could ) 136 SB
503 2478 221 (potentially ) 234 SB
737 2478 204 (overwrite ) 217 SB
954 2478 148 (system ) 161 SB
1115 2478 84 (and ) 97 SB
1212 2478 117 (acess ) 130 SB
1342 2478 214 (restriction ) 227 SB
1569 2478 106 (files. ) 119 SB
1688 2478 13 ( ) 27 SB
1715 2478 70 (To ) 84 SB
1799 2478 162 (prevent ) 176 SB
1975 2478 90 (such) 90 SB
265 2537 208 (problems, ) 215 SB
480 2537 169 (RasMol ) 176 SB
656 2537 100 (v2.5 ) 107 SB
763 2537 224 (disallowed ) 231 SB
994 2537 74 (the ) 81 SB
1075 2537 79 (use ) 86 SB
1161 2537 54 (of ) 62 SB
1223 2537 100 (save ) 108 SB
1331 2537 84 (and ) 92 SB
1423 2537 115 (write ) 123 SB
1546 2537 225 (commands ) 233 SB
1779 2537 136 (within ) 144 SB
1923 2537 142 (scripts.) 142 SB
265 2596 209 (However, ) 215 SB
480 2596 83 (this ) 89 SB
569 2596 78 (has ) 84 SB
653 2596 209 (prevented ) 215 SB
868 2596 74 (the ) 80 SB
948 2596 79 (use ) 85 SB
1033 2596 54 (of ) 60 SB
1093 2596 123 (script ) 129 SB
1222 2596 93 (files ) 99 SB
1321 2596 49 (in ) 56 SB
1377 2596 221 (generating ) 228 SB
1605 2596 192 (animated ) 199 SB
1804 2596 213 (sequences ) 220 SB
2024 2596 41 (of) 41 SB
265 2655 163 (images. ) 173 SB
438 2655 13 ( ) 23 SB
461 2655 90 (The ) 100 SB
561 2655 198 (proposed ) 209 SB
770 2655 172 (solution ) 183 SB
953 2655 54 (to ) 65 SB
1018 2655 83 (this ) 94 SB
1112 2655 176 (problem ) 187 SB
1299 2655 44 (is ) 55 SB
1354 2655 74 (the ) 85 SB
1439 2655 174 (addition ) 185 SB
1624 2655 54 (of ) 65 SB
1689 2655 74 (the ) 85 SB
1774 2655 169 (RasMol ) 180 SB
1954 2655 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1975 2659 90 (set) 90 SB
265 2721 180 (write ) 192 SB
457 2721 270 () 270 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
727 2717 35 (\224 ) 47 SB
774 2717 219 (command. ) 231 SB
1005 2717 13 ( ) 26 SB
1031 2717 99 (This ) 112 SB
1143 2717 206 (command ) 219 SB
1362 2717 158 (enables ) 171 SB
1533 2717 101 (\(and ) 114 SB
1647 2717 185 (disables\) ) 198 SB
1845 2717 74 (the ) 87 SB
1932 2717 79 (use ) 92 SB
2024 2717 41 (of) 41 SB
265 2779 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 2783 120 (save) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
406 2779 35 (\224 ) 38 SB
444 2779 84 (and ) 87 SB
531 2779 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
552 2783 150 (write) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
702 2779 35 (\224 ) 39 SB
741 2779 49 (in ) 53 SB
794 2779 155 (scripts, ) 159 SB
953 2779 77 (but ) 81 SB
1034 2779 95 (may ) 99 SB
1133 2779 98 (only ) 102 SB
1235 2779 59 (be ) 63 SB
1298 2779 190 (executed ) 194 SB
1492 2779 108 (from ) 112 SB
1604 2779 74 (the ) 78 SB
1682 2779 206 (command ) 210 SB
1892 2779 96 (line. ) 100 SB
1992 2779 13 ( ) 17 SB
2009 2779 56 (By) 56 SB
265 2841 428 (default, this value is \223) 428 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
693 2845 150 (false) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
843 2841 993 (\224, prohibiting the generation of files in any scripts ) 994 SB
1837 2841 190 (executed ) 191 SB
2028 2841 37 (at) 37 SB
1 #C
statusdict begin /manualfeed false store end
EJ RS
%%PageTrailer
%%PageResources: font Courier-Bold
%%+ font Times-Bold
%%+ font Times-Roman
%%Page: 5 5
%%PageResources: (atend)
SS
0 0 25 31 776 1169 300 SM
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
0 0 0 fC
265 209 168 (start-up ) 174 SB
439 209 120 (\(such ) 126 SB
565 209 54 (as ) 61 SB
626 209 119 (those ) 126 SB
752 209 189 (launched ) 196 SB
948 209 108 (from ) 115 SB
1063 209 35 (a ) 42 SB
1105 209 151 (WWW ) 158 SB
1263 209 174 (browser ) 181 SB
1444 209 103 (such ) 110 SB
1554 209 54 (as ) 61 SB
1615 209 158 (Mosaic ) 165 SB
1780 209 56 (or ) 63 SB
1843 209 222 (NetScape\).) 222 SB
265 268 1210 (However, animators may start up RasMol interactively, type ) 1211 SB
1476 268 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1497 272 120 (set ) 121 SB
1618 272 180 (write ) 181 SB
1799 272 60 (on) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1859 268 35 (\224 ) 36 SB
1895 268 84 (and ) 85 SB
1980 268 85 (then) 85 SB
265 330 1001 (execute a script to generate each frame using the \223) 1001 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1266 334 180 (source) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1446 330 241 (\224 command.) 241 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 451 920 ([4.4]  Storing Atom Co-ordinates in Scripts) 920 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 510 176 (Another ) 186 SB
451 510 201 (extension ) 211 SB
662 510 54 (to ) 64 SB
726 510 169 (RasMol ) 179 SB
905 510 54 (to ) 64 SB
969 510 121 (allow ) 131 SB
1100 510 128 (better ) 138 SB
1238 510 227 (integration ) 237 SB
1475 510 100 (with ) 110 SB
1585 510 151 (WWW ) 161 SB
1746 510 193 (browsers ) 203 SB
1949 510 44 (is ) 55 SB
2004 510 61 (the) 61 SB
265 569 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 573 180 (inline) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
466 569 35 (\224 ) 38 SB
504 569 212 (parameter ) 216 SB
720 569 54 (to ) 58 SB
778 569 74 (the ) 78 SB
856 569 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
877 573 120 (load) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
997 569 35 (\224 ) 39 SB
1036 569 219 (command. ) 223 SB
1259 569 13 ( ) 17 SB
1276 569 48 (A ) 52 SB
1328 569 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1349 573 120 (load) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1469 569 35 (\224 ) 39 SB
1508 569 206 (command ) 210 SB
1718 569 190 (executed ) 194 SB
1912 569 127 (inside ) 131 SB
2043 569 22 (a) 22 SB
265 631 123 (script ) 129 SB
394 631 74 (file ) 80 SB
474 631 95 (may ) 101 SB
575 631 99 (now ) 105 SB
680 631 151 (specify ) 157 SB
837 631 74 (the ) 80 SB
917 631 187 (keyword ) 193 SB
1110 631 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1131 635 180 (inline) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1311 631 35 (\224 ) 41 SB
1352 631 152 (instead ) 158 SB
1510 631 54 (of ) 61 SB
1571 631 35 (a ) 42 SB
1613 631 266 (conventional ) 273 SB
1886 631 179 (filename.) 179 SB
265 693 99 (This ) 102 SB
367 693 141 (option ) 144 SB
511 693 181 (specifies ) 184 SB
695 693 89 (that ) 92 SB
787 693 74 (the ) 77 SB
864 693 260 (co-ordinates ) 263 SB
1127 693 54 (of ) 57 SB
1184 693 74 (the ) 77 SB
1261 693 191 (molecule ) 194 SB
1455 693 54 (to ) 58 SB
1513 693 98 (load ) 102 SB
1615 693 74 (are ) 78 SB
1693 693 137 (stored ) 141 SB
1834 693 49 (in ) 53 SB
1887 693 74 (the ) 78 SB
1965 693 100 (same) 100 SB
265 752 74 (file ) 78 SB
343 752 54 (as ) 58 SB
401 752 74 (the ) 78 SB
479 752 190 (currently ) 194 SB
673 752 204 (executing ) 208 SB
881 752 238 (commands. ) 242 SB
1123 752 13 ( ) 17 SB
1140 752 195 (Typically ) 199 SB
1339 752 83 (this ) 87 SB
1426 752 44 (is ) 48 SB
1474 752 104 (used ) 108 SB
1582 752 49 (in ) 53 SB
1635 752 74 (the ) 78 SB
1713 752 206 (command ) 211 SB
1924 752 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1945 756 120 (load) 120 SB
265 818 120 (pdb ) 123 SB
388 818 180 (inline) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
568 814 48 (\224, ) 51 SB
619 814 131 (which ) 134 SB
753 814 44 (is ) 47 SB
800 814 187 (followed ) 190 SB
990 814 60 (by ) 63 SB
1053 814 35 (a ) 38 SB
1091 814 162 (number ) 165 SB
1256 814 54 (of ) 57 SB
1313 814 169 (RasMol ) 172 SB
1485 814 225 (commands ) 228 SB
1713 814 224 (terminated ) 227 SB
1940 814 60 (by ) 64 SB
2004 814 61 (the) 61 SB
265 876 206 (command ) 207 SB
472 876 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
493 880 120 (exit) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
613 876 48 (\224. ) 49 SB
662 876 13 ( ) 14 SB
676 876 90 (The ) 91 SB
767 876 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
788 880 120 (exit) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
908 876 35 (\224 ) 37 SB
945 876 206 (command ) 208 SB
1153 876 218 (terminates ) 220 SB
1373 876 205 (execution ) 207 SB
1580 876 54 (of ) 56 SB
1636 876 74 (the ) 76 SB
1712 876 155 (current ) 157 SB
1869 876 123 (script ) 125 SB
1994 876 71 (and) 71 SB
265 938 361 (returns control to ) 362 SB
627 938 74 (the ) 75 SB
702 938 206 (command ) 207 SB
909 938 83 (line ) 84 SB
993 938 73 (\(or ) 74 SB
1067 938 74 (the ) 75 SB
1142 938 142 (calling ) 143 SB
1285 938 153 (script\). ) 154 SB
1439 938 13 ( ) 14 SB
1453 938 99 (This ) 100 SB
1553 938 137 (means ) 138 SB
1691 938 82 (any ) 83 SB
1774 938 102 (lines ) 103 SB
1877 938 188 (following) 188 SB
265 997 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 1001 120 (exit) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
406 997 35 (\224 ) 47 SB
453 997 74 (are ) 86 SB
539 997 122 (never ) 134 SB
673 997 229 (interpreted ) 241 SB
914 997 60 (by ) 72 SB
986 997 182 (RasMol. ) 195 SB
1181 997 13 ( ) 26 SB
1207 997 131 (These ) 144 SB
1351 997 95 (may ) 108 SB
1459 997 59 (be ) 72 SB
1531 997 104 (used ) 117 SB
1648 997 54 (to ) 67 SB
1715 997 112 (store ) 125 SB
1840 997 147 (atomic ) 160 SB
2000 997 65 (co-) 65 SB
265 1059 195 (ordinates ) 205 SB
470 1059 49 (in ) 59 SB
529 1059 110 (PDB ) 120 SB
649 1059 74 (file ) 84 SB
733 1059 158 (format. ) 168 SB
901 1059 13 ( ) 23 SB
924 1059 178 (Because ) 188 SB
1112 1059 49 (in ) 59 SB
1171 1059 256 (Brookhaven ) 267 SB
1438 1059 110 (PDB ) 121 SB
1559 1059 74 (file ) 85 SB
1644 1059 158 (format, ) 169 SB
1813 1059 82 (any ) 93 SB
1906 1059 83 (line ) 94 SB
2000 1059 65 (not) 65 SB
265 1118 227 (recognised ) 232 SB
497 1118 60 (by ) 65 SB
562 1118 74 (the ) 79 SB
641 1118 135 (parser ) 140 SB
781 1118 144 (should ) 149 SB
930 1118 59 (be ) 64 SB
994 1118 177 (ignored, ) 182 SB
1176 1118 98 (only ) 103 SB
1279 1118 102 (lines ) 108 SB
1387 1118 205 (beginning ) 211 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
1598 1124 120 (ATOM) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1718 1118 26 (, ) 32 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
1750 1124 180 (HETATM) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1930 1118 26 (, ) 32 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
1962 1124 90 (TER) 90 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
2052 1118 13 (,) 13 SB
265 1179 85 (etc. ) 103 SB
368 1179 74 (are ) 92 SB
460 1179 214 (examined. ) 232 SB
692 1179 13 ( ) 31 SB
723 1179 139 (Hence ) 157 SB
880 1179 35 (a ) 53 SB
933 1179 74 (file ) 92 SB
1025 1179 95 (may ) 113 SB
1138 1179 59 (be ) 77 SB
1215 1179 102 (both ) 120 SB
1335 1179 35 (a ) 53 SB
1388 1179 169 (RasMol ) 188 SB
1576 1179 123 (script ) 142 SB
1718 1179 84 (and ) 103 SB
1821 1179 35 (a ) 54 SB
1875 1179 110 (PDB ) 129 SB
2004 1179 61 (file) 61 SB
265 1238 319 (simultaneously. ) 320 SB
585 1238 13 ( ) 14 SB
599 1238 99 (This ) 100 SB
699 1238 140 (allows ) 141 SB
840 1238 102 (both ) 104 SB
944 1238 241 (co-ordinate ) 243 SB
1187 1238 84 (and ) 86 SB
1273 1238 295 (representation ) 297 SB
1570 1238 97 (data ) 99 SB
1669 1238 54 (to ) 56 SB
1725 1238 59 (be ) 61 SB
1786 1238 236 (transmitted ) 238 SB
2024 1238 41 (as) 41 SB
265 1297 869 (a single file.  One possible use is a standard ) 870 SB
1135 1297 169 (RasMol ) 170 SB
1305 1297 123 (script ) 124 SB
1429 1297 128 (prefix ) 129 SB
1558 1297 89 (that ) 90 SB
1648 1297 95 (may ) 96 SB
1744 1297 59 (be ) 60 SB
1804 1297 261 (concatenated) 261 SB
265 1356 792 (with an appropriate PDB file on-the-fly.) 792 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1474 1043 ([4.5]  Atom Expression support for NMR Models) 1043 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 1533 90 (The ) 92 SB
357 1533 140 (syntax ) 143 SB
500 1533 54 (of ) 57 SB
557 1533 169 (RasMol ) 172 SB
729 1533 113 (atom ) 116 SB
845 1533 242 (expressions ) 245 SB
1090 1533 78 (has ) 81 SB
1171 1533 99 (now ) 102 SB
1273 1533 105 (been ) 108 SB
1381 1533 192 (extended ) 195 SB
1576 1533 54 (to ) 57 SB
1633 1533 121 (allow ) 124 SB
1757 1533 74 (the ) 77 SB
1834 1533 187 (selection ) 190 SB
2024 1533 41 (of) 41 SB
265 1592 206 (individual ) 207 SB
472 1592 191 (molecule ) 192 SB
664 1592 298 (conformations ) 299 SB
963 1592 40 (if ) 41 SB
1004 1592 157 (present ) 158 SB
1162 1592 49 (in ) 51 SB
1213 1592 59 (an ) 61 SB
1274 1592 126 (NMR ) 128 SB
1402 1592 74 (file ) 76 SB
1478 1592 71 (\(as ) 73 SB
1551 1592 179 (desribed ) 181 SB
1732 1592 49 (in ) 51 SB
1783 1592 153 (section ) 155 SB
1938 1592 127 ([5.2]\).) 127 SB
265 1651 90 (The ) 93 SB
358 1651 174 (simplest ) 177 SB
535 1651 108 (form ) 111 SB
646 1651 54 (of ) 57 SB
703 1651 74 (the ) 77 SB
780 1651 113 (atom ) 116 SB
896 1651 223 (expression ) 226 SB
1122 1651 44 (is ) 47 SB
1169 1651 74 (the ) 77 SB
1246 1651 140 (syntax ) 143 SB
1389 1651 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1410 1655 120 (::25) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1530 1651 48 (\224, ) 51 SB
1581 1651 54 (to ) 57 SB
1638 1651 125 (select ) 128 SB
1766 1651 135 (model ) 138 SB
1904 1651 63 (25 ) 66 SB
1970 1651 95 (from) 95 SB
265 1713 74 (the ) 75 SB
340 1713 204 (molecule. ) 205 SB
545 1713 13 ( ) 14 SB
559 1713 99 (This ) 100 SB
659 1713 44 (is ) 45 SB
704 1713 216 (equivalent ) 217 SB
921 1713 54 (to ) 55 SB
976 1713 74 (the ) 75 SB
1051 1713 113 (atom ) 114 SB
1165 1713 223 (expression ) 224 SB
1389 1713 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1410 1717 180 (model ) 181 SB
1591 1717 60 (= ) 61 SB
1652 1717 60 (25) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1712 1713 48 (\224, ) 49 SB
1761 1713 54 (as ) 55 SB
1816 1713 74 (the ) 75 SB
1891 1713 174 (keyword) 174 SB
265 1775 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 1779 150 (model) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
436 1775 35 (\224 ) 39 SB
475 1775 95 (may ) 99 SB
574 1775 99 (now ) 103 SB
677 1775 59 (be ) 63 SB
740 1775 104 (used ) 108 SB
848 1775 49 (in ) 53 SB
901 1775 243 (comparison ) 247 SB
1148 1775 255 (expressions. ) 259 SB
1407 1775 13 ( ) 17 SB
1424 1775 90 (The ) 94 SB
1518 1775 110 (most ) 114 SB
1632 1775 157 (general ) 161 SB
1793 1775 108 (form ) 113 SB
1906 1775 54 (of ) 59 SB
1965 1775 100 (atom) 100 SB
265 1837 223 (expression ) 233 SB
498 1837 44 (is ) 54 SB
552 1837 99 (now ) 109 SB
661 1837 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
682 1841 390 (CYS32:A:25.SG) 390 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1072 1837 35 (\224 ) 45 SB
1117 1837 131 (which ) 141 SB
1258 1837 166 (denotes ) 177 SB
1435 1837 74 (the ) 85 SB
1520 1837 156 (gamma ) 167 SB
1687 1837 160 (sulphur ) 171 SB
1858 1837 54 (of ) 65 SB
1923 1837 142 (residue) 142 SB
265 1899 705 (cysteine-32 in chain A of model 25.) 705 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2017 870 ([4.6]  Improved Atom Expression Syntax) 870 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2076 160 (Several ) 161 SB
426 2076 297 (simplifications ) 298 SB
724 2076 105 (have ) 106 SB
830 2076 105 (been ) 106 SB
936 2076 119 (made ) 120 SB
1056 2076 54 (to ) 55 SB
1111 2076 74 (the ) 75 SB
1186 2076 169 (RasMol ) 171 SB
1357 2076 113 (atom ) 115 SB
1472 2076 223 (expression ) 225 SB
1697 2076 153 (syntax. ) 155 SB
1852 2076 13 ( ) 15 SB
1867 2076 198 (Individual) 198 SB
265 2135 136 (chains ) 143 SB
408 2135 95 (may ) 103 SB
511 2135 59 (be ) 67 SB
578 2135 187 (specified ) 195 SB
773 2135 60 (by ) 68 SB
841 2135 74 (the ) 82 SB
923 2135 140 (syntax ) 148 SB
1071 2135 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1092 2139 60 (:A) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1152 2135 35 (\224 ) 43 SB
1195 2135 71 (for ) 79 SB
1274 2135 117 (chain ) 125 SB
1399 2135 61 (A, ) 69 SB
1468 2135 56 (or ) 64 SB
1532 2135 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1553 2139 60 (:1) 60 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1613 2135 35 (\224 ) 43 SB
1656 2135 71 (for ) 79 SB
1735 2135 117 (chain ) 125 SB
1860 2135 38 (1 ) 46 SB
1906 2135 90 (\(i.e. ) 98 SB
2004 2135 61 (the) 61 SB
265 2197 184 (wildcard ) 185 SB
450 2197 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
471 2201 30 (*) 30 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
501 2197 35 (\224 ) 36 SB
537 2197 95 (may ) 96 SB
633 2197 59 (be ) 60 SB
693 2197 178 (dropped ) 180 SB
873 2197 108 (from ) 110 SB
983 2197 74 (the ) 76 SB
1059 2197 223 (expression ) 225 SB
1284 2197 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1305 2201 90 (*:A) 90 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1395 2197 65 (\224\). ) 67 SB
1462 2197 13 ( ) 15 SB
1477 2197 99 (This ) 101 SB
1578 2197 95 (may ) 97 SB
1675 2197 92 (also ) 94 SB
1769 2197 59 (be ) 61 SB
1830 2197 192 (extended ) 194 SB
2024 2197 41 (to) 41 SB
265 2259 126 (NMR ) 127 SB
392 2259 167 (models; ) 168 SB
560 2259 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
581 2263 120 (:A:4) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
701 2259 35 (\224 ) 36 SB
737 2259 166 (denotes ) 167 SB
904 2259 117 (chain ) 118 SB
1022 2259 48 (A ) 49 SB
1071 2259 54 (of ) 55 SB
1126 2259 135 (model ) 136 SB
1262 2259 51 (4, ) 52 SB
1314 2259 84 (and ) 85 SB
1399 2259 105 (even ) 106 SB
1505 2259 115 (more ) 117 SB
1622 2259 108 (terse ) 110 SB
1732 2259 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1753 2263 90 (::4) 90 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1843 2259 35 (\224 ) 37 SB
1880 2259 137 (means ) 139 SB
2019 2259 46 (all) 46 SB
265 2321 729 (atoms in all chains of NMR model 4.) 729 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2439 750 ([4.7]  Improved Restrict Command) 750 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2498 90 (The ) 103 SB
368 2498 169 (RasMol ) 183 SB
551 2498 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
572 2502 240 (restrict) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
812 2498 35 (\224 ) 49 SB
861 2498 206 (command ) 220 SB
1081 2498 99 (now ) 113 SB
1194 2498 113 (turns ) 127 SB
1321 2498 69 (off ) 83 SB
1404 2498 74 (the ) 88 SB
1492 2498 151 (display ) 165 SB
1657 2498 54 (of ) 68 SB
1725 2498 172 (ribbons, ) 186 SB
1911 2498 154 (strands,) 154 SB
265 2560 184 (cartoons ) 189 SB
454 2560 84 (and ) 89 SB
543 2560 221 (backbones ) 226 SB
769 2560 157 (outside ) 162 SB
931 2560 54 (of ) 59 SB
990 2560 74 (the ) 79 SB
1069 2560 120 (given ) 125 SB
1194 2560 113 (atom ) 118 SB
1312 2560 236 (expression. ) 241 SB
1553 2560 13 ( ) 19 SB
1572 2560 99 (This ) 105 SB
1677 2560 206 (command ) 212 SB
1889 2560 105 (does ) 111 SB
2000 2560 65 (not) 65 SB
265 2619 190 (currently ) 197 SB
462 2619 124 (affect ) 131 SB
593 2619 174 (distance ) 182 SB
775 2619 202 (monitors, ) 210 SB
985 2619 79 (dot ) 87 SB
1072 2619 174 (surfaces ) 182 SB
1254 2619 56 (or ) 64 SB
1318 2619 124 (labels ) 132 SB
1450 2619 77 (but ) 85 SB
1535 2619 83 (this ) 91 SB
1626 2619 95 (may ) 103 SB
1729 2619 152 (change ) 160 SB
1889 2619 49 (in ) 57 SB
1946 2619 119 (future) 119 SB
265 2678 399 (versions of RasMol.) 399 SB
1 #C
statusdict begin /manualfeed false store end
EJ RS
%%PageTrailer
%%PageResources: font Courier
%%+ font Courier-Bold
%%+ font Times-Bold
%%+ font Times-Roman
%%Page: 6 6
%%PageResources: (atend)
SS
0 0 25 31 776 1169 300 SM
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
0 0 0 fC
265 209 450 ([5] FILE FORMATS) 450 SB
265 327 595 ([5.1]  MOPAC File Formats) 595 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 386 169 (RasMol ) 172 SB
437 386 81 (can ) 84 SB
521 386 99 (now ) 102 SB
623 386 99 (read ) 102 SB
725 386 189 (MOPAC ) 192 SB
917 386 145 (format ) 148 SB
1065 386 106 (files. ) 109 SB
1174 386 13 ( ) 17 SB
1191 386 90 (The ) 94 SB
1285 386 95 (new ) 99 SB
1384 386 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1405 390 150 (load ) 154 SB
1559 390 180 (mopac ) 184 SB
1743 390 300 () 300 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
2043 386 22 (\224) 22 SB
265 448 206 (command ) 212 SB
477 448 278 (automatically ) 284 SB
761 448 266 (distinguishes ) 272 SB
1033 448 178 (between ) 184 SB
1217 448 189 (MOPAC ) 196 SB
1413 448 114 (input ) 121 SB
1534 448 84 (and ) 91 SB
1625 448 144 (output ) 151 SB
1776 448 74 (file ) 81 SB
1857 448 130 (types, ) 137 SB
1994 448 71 (and) 71 SB
265 507 81 (can ) 87 SB
352 507 99 (read ) 105 SB
457 507 114 (input ) 120 SB
577 507 93 (files ) 99 SB
676 507 49 (in ) 55 SB
731 507 102 (both ) 109 SB
840 507 188 (cartesian ) 195 SB
1035 507 84 (and ) 91 SB
1126 507 161 (internal ) 168 SB
1294 507 213 (\(z-matrix\) ) 220 SB
1514 507 177 (formats. ) 184 SB
1698 507 13 ( ) 20 SB
1718 507 169 (RasMol ) 176 SB
1894 507 85 (will ) 92 SB
1986 507 79 (also) 79 SB
265 566 99 (read ) 103 SB
368 566 74 (the ) 78 SB
446 566 145 (charge ) 149 SB
595 566 243 (information ) 247 SB
842 566 49 (in ) 53 SB
895 566 189 (MOPAC ) 193 SB
1088 566 144 (output ) 149 SB
1237 566 106 (files, ) 111 SB
1348 566 184 (however ) 189 SB
1537 566 40 (it ) 45 SB
1582 566 81 (can ) 86 SB
1668 566 78 (not ) 83 SB
1751 566 99 (read ) 104 SB
1855 566 74 (the ) 79 SB
1934 566 131 (output) 131 SB
265 625 716 (files of MOPAC jobs specifying the ) 716 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
981 631 150 (NOXYZ) 150 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1131 625 200 ( keyword.) 200 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 745 886 ([5.2]  Multiple NMR Models in PDB Files) 886 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 804 264 (RasMol may ) 265 SB
530 804 99 (now ) 100 SB
630 804 98 (load ) 99 SB
729 804 59 (all ) 60 SB
789 804 54 (of ) 55 SB
844 804 74 (the ) 75 SB
919 804 126 (NMR ) 127 SB
1046 804 154 (models ) 155 SB
1201 804 108 (from ) 109 SB
1310 804 35 (a ) 36 SB
1346 804 256 (Brookhaven ) 257 SB
1603 804 110 (PDB ) 111 SB
1714 804 74 (file ) 75 SB
1789 804 118 (using ) 119 SB
1908 804 74 (the ) 75 SB
1983 804 82 (new) 82 SB
265 863 206 (command ) 211 SB
476 863 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
497 867 150 (load ) 156 SB
653 867 210 (nmrpdb ) 216 SB
869 867 300 () 300 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1169 863 48 (\224. ) 54 SB
1223 863 13 ( ) 19 SB
1242 863 90 (The ) 96 SB
1338 863 126 (NMR ) 132 SB
1470 863 74 (file ) 80 SB
1550 863 145 (format ) 151 SB
1701 863 181 (instructs ) 187 SB
1888 863 74 (the ) 80 SB
1968 863 97 (PDB) 97 SB
265 925 138 (reader ) 146 SB
411 925 54 (to ) 62 SB
473 925 98 (load ) 106 SB
579 925 59 (all ) 67 SB
646 925 74 (the ) 82 SB
728 925 154 (models ) 162 SB
890 925 108 (from ) 116 SB
1006 925 74 (the ) 82 SB
1088 925 110 (PDB ) 118 SB
1206 925 87 (file, ) 95 SB
1301 925 152 (instead ) 160 SB
1461 925 54 (of ) 62 SB
1523 925 84 (just ) 92 SB
1615 925 74 (the ) 82 SB
1697 925 91 (first ) 99 SB
1796 925 85 (one ) 93 SB
1889 925 54 (as ) 62 SB
1951 925 44 (is ) 53 SB
2004 925 61 (the) 61 SB
265 984 209 (behaviour ) 217 SB
482 984 54 (of ) 62 SB
544 984 74 (the ) 83 SB
627 984 183 (\(default\) ) 192 SB
819 984 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
840 988 90 (pdb) 90 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
930 984 35 (\224 ) 44 SB
974 984 145 (format ) 154 SB
1128 984 192 (specifier. ) 201 SB
1329 984 13 ( ) 22 SB
1351 984 45 (If ) 54 SB
1405 984 74 (the ) 83 SB
1488 984 187 (specified ) 196 SB
1684 984 110 (PDB ) 119 SB
1803 984 74 (file ) 83 SB
1886 984 105 (does ) 114 SB
2000 984 65 (not) 65 SB
265 1046 158 (contain ) 167 SB
432 1046 59 (an ) 68 SB
500 1046 126 (NMR ) 136 SB
636 1046 190 (structure ) 200 SB
836 1046 74 (the ) 84 SB
920 1046 209 (behaviour ) 219 SB
1139 1046 54 (of ) 64 SB
1203 1046 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1224 1050 180 (nmrpdb) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1404 1046 35 (\224 ) 45 SB
1449 1046 44 (is ) 54 SB
1503 1046 179 (identical ) 189 SB
1692 1046 54 (to ) 64 SB
1756 1046 89 (that ) 99 SB
1855 1046 54 (of ) 64 SB
1919 1046 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1940 1050 90 (pdb) 90 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
2030 1046 35 (\224.) 35 SB
265 1108 117 (Once ) 122 SB
387 1108 173 (multiple ) 178 SB
565 1108 126 (NMR ) 131 SB
696 1108 298 (conformations ) 303 SB
999 1108 105 (have ) 110 SB
1109 1108 105 (been ) 110 SB
1219 1108 145 (loaded ) 150 SB
1369 1108 97 (they ) 103 SB
1472 1108 95 (may ) 101 SB
1573 1108 59 (be ) 65 SB
1638 1108 254 (manipulated ) 260 SB
1898 1108 100 (with ) 106 SB
2004 1108 61 (the) 61 SB
265 1167 1069 (atom expression extensions described in section [4.5].) 1069 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1285 553 ([5.3]  Alchemy File Fomat) 553 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 1344 90 (The ) 103 SB
368 1344 188 (Alchemy ) 201 SB
569 1344 74 (file ) 87 SB
656 1344 145 (format ) 159 SB
815 1344 138 (reader ) 152 SB
967 1344 78 (has ) 92 SB
1059 1344 105 (been ) 119 SB
1178 1344 198 (enhanced ) 212 SB
1390 1344 54 (to ) 68 SB
1458 1344 121 (allow ) 135 SB
1593 1344 199 (hydrogen ) 213 SB
1806 1344 131 (bonds ) 145 SB
1951 1344 54 (to ) 68 SB
2019 1344 46 (be) 46 SB
265 1403 192 (explicitly ) 204 SB
469 1403 243 (represented ) 255 SB
724 1403 49 (in ) 61 SB
785 1403 35 (a ) 47 SB
832 1403 74 (file ) 86 SB
918 1403 118 (using ) 131 SB
1049 1403 74 (the ) 87 SB
1136 1403 187 (keyword ) 200 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
1336 1409 240 (HYDROGEN) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1576 1403 26 (, ) 39 SB
1615 1403 152 (instead ) 165 SB
1780 1403 54 (of ) 67 SB
1847 1403 74 (the ) 87 SB
1934 1403 131 (typical) 131 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
265 1470 180 (SINGLE) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
445 1464 26 (, ) 26 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
471 1470 180 (DOUBLE) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
651 1464 26 (, ) 26 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
677 1470 180 (TRIPLE) 180 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
857 1464 69 ( or ) 69 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
926 1470 240 (AROMATIC) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1166 1464 13 (.) 13 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1584 756 ([5.4]  IRIS RGB Image File Format) 756 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 1643 169 (RasMol ) 170 SB
435 1643 63 (on ) 64 SB
499 1643 59 (all ) 60 SB
559 1643 201 (platforms ) 202 SB
761 1643 99 (now ) 100 SB
861 1643 184 (supports ) 185 SB
1046 1643 74 (the ) 75 SB
1121 1643 222 (generation ) 223 SB
1344 1643 54 (of ) 55 SB
1399 1643 150 (images ) 151 SB
1550 1643 49 (in ) 50 SB
1600 1643 108 (IRIS ) 109 SB
1709 1643 115 (RGB ) 116 SB
1825 1643 145 (format ) 147 SB
1972 1643 93 (files.) 93 SB
265 1702 99 (This ) 111 SB
376 1702 74 (file ) 86 SB
462 1702 145 (format ) 157 SB
619 1702 44 (is ) 56 SB
675 1702 115 (often ) 127 SB
802 1702 104 (used ) 116 SB
918 1702 119 (when ) 131 SB
1049 1702 164 (running ) 177 SB
1226 1702 63 (on ) 76 SB
1302 1702 149 (Silicon ) 162 SB
1464 1702 190 (Graphics ) 203 SB
1667 1702 282 (workstations. ) 295 SB
1962 1702 13 ( ) 26 SB
1988 1702 77 (The) 77 SB
265 1761 241 (appropriate ) 245 SB
510 1761 108 (form ) 112 SB
622 1761 54 (of ) 58 SB
680 1761 115 (RGB ) 119 SB
799 1761 74 (file ) 78 SB
877 1761 44 (is ) 48 SB
925 1761 104 (used ) 108 SB
1033 1761 60 (by ) 64 SB
1097 1761 102 (both ) 106 SB
1203 1761 89 (8bit ) 93 SB
1296 1761 84 (and ) 88 SB
1384 1761 114 (32bit ) 118 SB
1502 1761 176 (versions ) 181 SB
1683 1761 54 (of ) 59 SB
1742 1761 182 (RasMol. ) 187 SB
1929 1761 13 ( ) 18 SB
1947 1761 118 (These) 118 SB
265 1820 618 (files may be created using the \223) 618 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
883 1824 630 (write iris ) 630 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1513 1820 241 (\224 command.) 241 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1941 588 ([5.5] MDL Mol File Output) 588 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2000 169 (RasMol ) 175 SB
440 2000 157 (version ) 163 SB
603 2000 76 (2.6 ) 82 SB
685 2000 95 (may ) 101 SB
786 2000 99 (now ) 105 SB
891 2000 59 (be ) 65 SB
956 2000 104 (used ) 110 SB
1066 2000 54 (to ) 60 SB
1126 2000 182 (generate ) 188 SB
1314 2000 123 (MDL ) 129 SB
1443 2000 95 (Mol ) 101 SB
1544 2000 106 (files. ) 112 SB
1656 2000 13 ( ) 19 SB
1675 2000 90 (The ) 96 SB
1771 2000 95 (new ) 101 SB
1872 2000 193 (command) 193 SB
265 2059 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
286 2063 150 (save ) 155 SB
441 2063 120 (mdl ) 125 SB
566 2063 300 () 300 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
866 2059 35 (\224 ) 40 SB
906 2059 119 (saves ) 124 SB
1030 2059 74 (the ) 79 SB
1109 2059 190 (currently ) 195 SB
1304 2059 172 (selected ) 177 SB
1481 2059 69 (set ) 74 SB
1555 2059 54 (of ) 59 SB
1614 2059 132 (atoms ) 137 SB
1751 2059 54 (to ) 60 SB
1811 2059 74 (the ) 80 SB
1891 2059 174 (specified) 174 SB
265 2121 465 (file in MDL file format.) 465 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 2298 563 ([6] MACHINE SPECIFIC) 563 SB
265 2416 858 ([6.1]  Monochrome X Windows Support) 858 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 2475 169 (RasMol ) 182 SB
447 2475 99 (now ) 112 SB
559 2475 184 (supports ) 197 SB
756 2475 74 (the ) 87 SB
843 2475 119 (many ) 132 SB
975 2475 274 (monochrome ) 287 SB
1262 2475 138 (UNIX ) 151 SB
1413 2475 269 (workstations ) 282 SB
1695 2475 179 (typically ) 192 SB
1887 2475 128 (found ) 142 SB
2029 2475 36 (in) 36 SB
265 2534 210 (academic, ) 211 SB
476 2534 103 (such ) 104 SB
580 2534 54 (as ) 55 SB
635 2534 175 (low-end ) 176 SB
811 2534 113 (SUN ) 114 SB
925 2534 269 (workstations ) 270 SB
1195 2534 84 (and ) 85 SB
1280 2534 118 (NCD ) 119 SB
1399 2534 259 (X-terminals. ) 260 SB
1659 2534 13 ( ) 14 SB
1673 2534 90 (The ) 91 SB
1764 2534 99 (X11 ) 101 SB
1865 2534 157 (version ) 159 SB
2024 2534 41 (of) 41 SB
265 2593 169 (RasMol ) 174 SB
439 2593 136 (\(when ) 141 SB
580 2593 194 (compiled ) 199 SB
779 2593 49 (in ) 54 SB
833 2593 89 (8bit ) 94 SB
927 2593 140 (mode\) ) 146 SB
1073 2593 99 (now ) 105 SB
1178 2593 153 (detects ) 159 SB
1337 2593 118 (black ) 124 SB
1461 2593 51 (& ) 57 SB
1518 2593 122 (white ) 128 SB
1646 2593 49 (X ) 55 SB
1701 2593 201 (Windows ) 207 SB
1908 2593 157 (displays) 157 SB
265 2652 84 (and ) 86 SB
351 2652 158 (enables ) 160 SB
511 2652 189 (dithering ) 191 SB
702 2652 291 (automatically. ) 294 SB
996 2652 13 ( ) 16 SB
1012 2652 13 ( ) 16 SB
1028 2652 90 (The ) 93 SB
1121 2652 79 (use ) 82 SB
1203 2652 54 (of ) 57 SB
1260 2652 182 (run-time ) 185 SB
1445 2652 112 (error ) 115 SB
1560 2652 186 (diffusion ) 189 SB
1749 2652 189 (dithering ) 192 SB
1941 2652 124 (means) 124 SB
265 2711 89 (that ) 97 SB
362 2711 59 (all ) 67 SB
429 2711 151 (display ) 159 SB
588 2711 142 (modes ) 151 SB
739 2711 54 (of ) 63 SB
802 2711 169 (RasMol ) 178 SB
980 2711 74 (are ) 83 SB
1063 2711 185 (available ) 194 SB
1257 2711 119 (when ) 128 SB
1385 2711 49 (in ) 58 SB
1443 2711 274 (monochrome ) 283 SB
1726 2711 136 (mode. ) 145 SB
1871 2711 13 ( ) 22 SB
1893 2711 83 (For ) 92 SB
1985 2711 80 (best) 80 SB
265 2770 155 (results, ) 166 SB
431 2770 115 (users ) 126 SB
557 2770 144 (should ) 156 SB
713 2770 233 (experiment ) 245 SB
958 2770 100 (with ) 112 SB
1070 2770 74 (the ) 86 SB
1156 2770 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1177 2774 120 (set ) 132 SB
1309 2774 210 (ambient) 210 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1519 2770 35 (\224 ) 47 SB
1566 2770 206 (command ) 218 SB
1784 2770 54 (to ) 66 SB
1850 2770 142 (ensure ) 154 SB
2004 2770 61 (the) 61 SB
265 2832 763 (maximum contrast in resulting images.) 763 SB
1 #C
statusdict begin /manualfeed false store end
EJ RS
%%PageTrailer
%%PageResources: font Courier
%%+ font Courier-Bold
%%+ font Times-Bold
%%+ font Times-Roman
%%Page: 7 7
%%PageResources: (atend)
SS
0 0 25 31 776 1169 300 SM
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
0 0 0 fC
265 268 786 ([6.2]  Tcl/Tk 3.x and 4.x IPC support) 786 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 327 90 (The ) 91 SB
356 327 170 (recently ) 171 SB
527 327 227 (announced ) 228 SB
755 327 157 (version ) 158 SB
913 327 38 (4 ) 39 SB
952 327 54 (of ) 55 SB
1007 327 69 (Tk ) 70 SB
1077 327 179 (graphics ) 180 SB
1257 327 140 (library ) 142 SB
1399 327 78 (has ) 80 SB
1479 327 177 (changed ) 179 SB
1658 327 74 (the ) 76 SB
1734 327 182 (protocol ) 184 SB
1918 327 104 (used ) 106 SB
2024 327 41 (to) 41 SB
265 386 786 (communicate between Tk applications. ) 787 SB
1052 386 13 ( ) 14 SB
1066 386 169 (RasMol ) 170 SB
1236 386 157 (version ) 158 SB
1394 386 76 (2.6 ) 77 SB
1471 386 78 (has ) 79 SB
1550 386 105 (been ) 106 SB
1656 386 187 (modified ) 188 SB
1844 386 103 (such ) 104 SB
1948 386 89 (that ) 90 SB
2038 386 27 (it) 27 SB
265 445 81 (can ) 88 SB
353 445 99 (now ) 106 SB
459 445 277 (communicate ) 284 SB
743 445 100 (with ) 108 SB
851 445 102 (both ) 110 SB
961 445 83 (this ) 91 SB
1052 445 95 (new ) 103 SB
1155 445 182 (protocol ) 190 SB
1345 445 84 (and ) 92 SB
1437 445 74 (the ) 82 SB
1519 445 158 (previos ) 166 SB
1685 445 157 (version ) 165 SB
1850 445 38 (3 ) 46 SB
1896 445 169 (protocol) 169 SB
265 504 989 (supported by RasMol v2.5.  Although Tcl/Tk 3.x ) 990 SB
1255 504 249 (applications ) 250 SB
1505 504 95 (may ) 96 SB
1601 504 98 (only ) 99 SB
1700 504 277 (communicate ) 278 SB
1978 504 87 (with) 87 SB
265 563 117 (other ) 130 SB
395 563 75 (3.x ) 88 SB
483 563 249 (applications ) 262 SB
745 563 84 (and ) 97 SB
842 563 148 (Tcl/Tk ) 161 SB
1003 563 75 (4.x ) 88 SB
1091 563 249 (applications ) 262 SB
1353 563 100 (with ) 114 SB
1467 563 117 (other ) 131 SB
1598 563 75 (4.x ) 89 SB
1687 563 262 (applications, ) 276 SB
1963 563 102 (these) 102 SB
265 622 171 (changes ) 184 SB
449 622 121 (allow ) 134 SB
583 622 169 (RasMol ) 182 SB
765 622 100 (v2.6 ) 113 SB
878 622 54 (to ) 68 SB
946 622 277 (communicate ) 291 SB
1237 622 178 (between ) 192 SB
1429 622 204 (processes ) 218 SB
1647 622 100 (with ) 114 SB
1761 622 102 (both ) 116 SB
1877 622 188 (protocols) 188 SB
265 681 517 (\(potentially concurrently\).) 517 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 799 647 ([6.3]  UNIX sockets based IPC) 647 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 858 90 (The ) 123 SB
388 858 138 (UNIX ) 171 SB
559 858 318 (implementation ) 351 SB
910 858 54 (of ) 87 SB
997 858 169 (RasMol ) 202 SB
1199 858 100 (v2.6 ) 134 SB
1333 858 99 (now ) 133 SB
1466 858 184 (supports ) 218 SB
1684 858 218 (BSD-style ) 252 SB
1936 858 129 (socket) 129 SB
265 917 330 (communication. ) 333 SB
598 917 13 ( ) 16 SB
614 917 72 (An ) 75 SB
689 917 179 (identical ) 182 SB
871 917 142 (socket ) 145 SB
1016 917 232 (mechanism ) 235 SB
1251 917 44 (is ) 47 SB
1298 917 92 (also ) 95 SB
1393 917 120 (being ) 123 SB
1516 917 216 (developed ) 219 SB
1735 917 71 (for ) 74 SB
1809 917 134 (VMS, ) 137 SB
1946 917 119 (Apple) 119 SB
265 976 101 (Mac ) 104 SB
369 976 84 (and ) 87 SB
456 976 209 (Microsoft ) 212 SB
668 976 201 (Windows ) 204 SB
872 976 180 (systems. ) 183 SB
1055 976 13 ( ) 17 SB
1072 976 99 (This ) 103 SB
1175 976 140 (allows ) 144 SB
1319 976 144 (should ) 148 SB
1467 976 121 (allow ) 125 SB
1592 976 169 (RasMol ) 173 SB
1765 976 54 (to ) 58 SB
1823 976 242 (interactively) 242 SB
265 1035 151 (display ) 152 SB
417 1035 142 (results ) 143 SB
560 1035 54 (of ) 55 SB
615 1035 35 (a ) 36 SB
651 1035 262 (computation ) 263 SB
914 1035 63 (on ) 64 SB
978 1035 35 (a ) 36 SB
1014 1035 152 (remote ) 154 SB
1168 1035 110 (host. ) 112 SB
1280 1035 13 ( ) 15 SB
1295 1035 90 (The ) 92 SB
1387 1035 155 (current ) 157 SB
1544 1035 182 (protocol ) 184 SB
1728 1035 91 (acts ) 93 SB
1821 1035 54 (as ) 56 SB
1877 1035 35 (a ) 37 SB
1914 1035 151 (TCP/IP) 151 SB
265 1094 134 (server ) 138 SB
403 1094 63 (on ) 67 SB
470 1094 96 (port ) 101 SB
571 1094 138 (21069 ) 143 SB
714 1094 89 (that ) 94 SB
808 1094 184 (executes ) 189 SB
997 1094 206 (command ) 211 SB
1208 1094 102 (lines ) 107 SB
1315 1094 101 (until ) 106 SB
1421 1094 125 (either ) 130 SB
1551 1094 74 (the ) 79 SB
1630 1094 206 (command ) 211 SB
1841 1094 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1862 1098 120 (exit) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1982 1094 35 (\224 ) 40 SB
2022 1094 43 (or) 43 SB
265 1156 74 (the ) 78 SB
343 1156 206 (command ) 210 SB
553 1156 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
574 1160 120 (quit) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
694 1156 35 (\224 ) 39 SB
733 1156 44 (is ) 48 SB
781 1156 136 (typed. ) 140 SB
921 1156 13 ( ) 17 SB
938 1156 13 ( ) 17 SB
955 1156 90 (The ) 94 SB
1049 1156 206 (command ) 210 SB
1259 1156 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1280 1160 120 (exit) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1400 1156 35 (\224 ) 39 SB
1439 1156 243 (disconnects ) 247 SB
1686 1156 74 (the ) 78 SB
1764 1156 155 (current ) 160 SB
1924 1156 141 (session) 141 SB
265 1218 108 (from ) 111 SB
376 1218 74 (the ) 78 SB
454 1218 169 (RasMol ) 173 SB
627 1218 147 (server, ) 151 SB
778 1218 74 (the ) 78 SB
856 1218 206 (command ) 210 SB
1066 1218 21 (\223) 21 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
1087 1222 120 (quit) 120 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1207 1218 35 (\224 ) 39 SB
1246 1218 102 (both ) 106 SB
1352 1218 243 (disconnects ) 247 SB
1599 1218 74 (the ) 78 SB
1677 1218 155 (current ) 159 SB
1836 1218 154 (session ) 158 SB
1994 1218 71 (and) 71 SB
265 1280 926 (terminates RasMol.  This functionality may be ) 927 SB
1192 1280 131 (tested ) 132 SB
1324 1280 118 (using ) 119 SB
1443 1280 74 (the ) 75 SB
1518 1280 138 (UNIX ) 139 SB
1657 1280 206 (command ) 207 SB
1864 1280 21 (\223) 21 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
1885 1286 180 (telnet) 180 SB
265 1347 480 ( 21069) 480 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
745 1341 35 (\224.) 35 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
265 1461 827 ([6.4] Compiling RasWin with Borland.) 827 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
265 1520 645 (A number of changes have been ) 646 SB
911 1520 119 (made ) 120 SB
1031 1520 54 (to ) 55 SB
1086 1520 74 (the ) 75 SB
1161 1520 144 (source ) 145 SB
1306 1520 108 (code ) 109 SB
1415 1520 54 (to ) 55 SB
1470 1520 121 (allow ) 122 SB
1592 1520 74 (the ) 75 SB
1667 1520 209 (Microsoft ) 210 SB
1877 1520 188 (Windows) 188 SB
265 1579 157 (version ) 164 SB
429 1579 54 (of ) 61 SB
490 1579 169 (RasMol ) 176 SB
666 1579 54 (to ) 61 SB
727 1579 169 (compile ) 176 SB
903 1579 118 (using ) 125 SB
1028 1579 74 (the ) 81 SB
1109 1579 172 (Borland ) 179 SB
1288 1579 149 (C/C++ ) 156 SB
1444 1579 199 (compiler. ) 206 SB
1650 1579 13 ( ) 21 SB
1671 1579 131 (These ) 139 SB
1810 1579 105 (fixes ) 113 SB
1923 1579 142 (include) 142 SB
265 1638 1442 (name changes for the standard library and special code to avoid a bug in ) 1442 SB
32 0 0 50 50 0 0 0 39 /Courier /font0 ANSIFont font
1707 1644 240 (_fmemset) 240 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
1947 1638 13 (.) 13 SB
1 #C
statusdict begin /manualfeed false store end
EJ RS
%%PageTrailer
%%PageResources: font Courier
%%+ font Courier-Bold
%%+ font Times-Bold
%%+ font Times-Roman
%%Trailer
SVDoc restore
end
%%Pages: 7
% TrueType font name key:
%    MSTT31c0fe = 400fDTimes New RomanF0000002a000001900000
%    MSTT31c10b = 400fDTimes New RomanF00000053000002bc0000
%    MSTT31c1d8 = 400fDTimes New RomanF00000032000001900000
%    MSTT31c1e5 = 400fDTimes New RomanF00000032000002bc0000
%    MSTT31c1f2 = 43f7DCourier NewF00000032000002bc0000
%    MSTT31c1fe = 43f7DCourier NewF00000032000001900000
%    MSTT31c20a = 43f7DTimes New RomanF0000002a000001900000
%    MSTT31c217 = 43f7DTimes New RomanF00000053000002bc0000
%    MSTT31c224 = 43f7DTimes New RomanF00000032000001900000
%    MSTT31c231 = 43f7DTimes New RomanF00000032000002bc0000
%%DocumentSuppliedResources: procset Win35Dict 3 1

%%DocumentNeededResources: font Courier
%%+ font Courier-Bold
%%+ font Times-Bold
%%+ font Times-Roman

%%EOF