From owner-chemistry:~at~:ccl.net Tue Nov 28 13:03:59 1995 Received: from bedrock.ccl.net for owner-chemistry: at :ccl.net by www.ccl.net (8.6.10/950822.1) id NAA26914; Tue, 28 Nov 1995 13:03:58 -0500 Received: from bioc1.biosym.com for mjf: at :iris120.biosym.com by bedrock.ccl.net (8.7.1/950822.1) id NAA03156; Tue, 28 Nov 1995 13:03:43 -0500 (EST) Received: from iris120.biosym.com by bioc1.biosym.com (5.64/0.0) id AA25503; Tue, 28 Nov 95 10:02:39 -0800 Received: by iris120.biosym.com (940816.SGI.8.6.9/930416.SGI) for chemistry-!at!-ccl.net id KAA01618; Tue, 28 Nov 1995 10:03:11 -0800 Date: Tue, 28 Nov 1995 10:03:11 -0800 From: mjf ":at:" biosym.com (Mark J Forster ) Subject: Chemical Shift and Shielding Calculations Message-Id: <199511281803.KAA01618 $#at#$ iris120.biosym.com> To: chemistry-!at!-ccl.net Subject: Chemical Shift and Shielding Calculations. Seiji Mori asked the following question: > Dear Sirs, > > I posted to CCL about the methods of NMR calculation a fey days ago , and > had an other question. > In G94, I tried to calculate the chemical shifts , there are magnetic > shieldings snip... > Would you please tell me the physical meaning of isotropic and anitrosopy, > and which is an equivalent of the experimental chemical shift? It is better > that > you show the references. > > Sincerely yours, > Seiji Mori email:smori # - at - # chem.s.u-tokyo.ac.jp The property calculated by an ab initio shielding scheme is typically a nuclear magnetic shielding tensor in the form of a 3x3 matrix. In physical terms the elements of the tensor represent the shielding along x,y and z when the applied magnetic field is along x,y and z in turn. This matrix may then be separated into symmetric and antisymmetric components, when the former is diagonalised then one obtains the three principal components of the shielding tensor denoted sigma(1,1) sigma(2,2) and sigma(3,3) with the convention sigma(3,3) >= sigma(2,2) >= sigma(1,1) the isotropic part of the shielding tensor is the trace or average of these three components and represents the value expected for an atom in a molecule that tumbles rapidly and isotropically. trace = ( sigma(1,1) + sigma(2,2) + sigma(3,3)) /3 In non isotropic systems such as single crystals or oriented liquid crystals the shielding takes on an orientational dependence. The shielding anisotropy is defined as anisotropy = sigma(3,3) - ( sigma(1,1)+sigma(2,2) )/2 and is a measure of the deviation of the shielding from spherical symmetry. For heavier nuclei the shielding anisotropy can be large (eg > 5000 ppm in 199Hg and 205Tl compounds) and this can often be a significant mechanism for nuclear spin relaxation. In addition the shielding asymmetry may be defined as asymmetry = (sigma(2,2)-sigma(1,1) ) / (sigma(3,3) -trace) An axially symmetric shielding tensor has a non zero anisotropy but a zero value for the asymmetry. The chemical shift measured by NMR is the difference between the shielding tensors for a nucleus in the compound under study and in the reference compound (typically TMS for 1H, 13C and 29Si). So to compare ab initio computed shielding with experimental chemical shifts two calculations will need to be performed one for the molecule under study and one for the reference compound. In addition experimental shifts are often found to be sensitive to environmental conditions such as solvent used, temperature, salt concentration etc. These are usually not taken into consideration in an ab initio calculation and so the comparison may only be valid if the intrinsic shift variations across a range of compounds far outweigh the environmental effects. No references to hand at the moment but I hope this helps. Best Wishes __________________________________________________________ Mark / ___ / / /| / Mark J Forster / / | / Biosym / Molecular Simulations. /__/__|/ \__O_/ 9685 Scranton Rd, /__/ | San Diego, CA 92121, USA. / | /| Tel: (619) 458 9990 / o |<-------- / | FAX: (619) 458 0136 /__ __| e-mail: mjf ^at^ biosym.com / Follower of Manchester United FC. / FA cup winners 1990, / European cup winners cup winners 1991, League cup winners 1992, / FA Premier League champions 1993, FA charity shield winners 1993/4. / FA Premier League champions AND FA cup winners 1994. /_________________________________________________________ ******************************************************************************* * DISCLAIMER: Unless indicated otherwise, everything in this note is * * personal opinion, not an official statement of Biosym / MSI * *******************************************************************************