From chemistry-request "-at-" server.ccl.net Thu Jun 17 12:56:49 1999 Received: from dedalus.lcc.ufmg.br (dedalus.lcc.ufmg.br [150.164.65.10]) by server.ccl.net (8.8.7/8.8.7) with ESMTP id MAA27419 for ; Thu, 17 Jun 1999 12:56:44 -0400 Received: from localhost (amolive _-at-_)localhost) by dedalus.lcc.ufmg.br (8.9.3/8.9.3) with SMTP id NAA39107; Thu, 17 Jun 1999 13:47:31 -0300 Date: Thu, 17 Jun 1999 13:47:31 -0300 (BSC) From: andre mauricio de oliveira To: Alexander Klinsky cc: CHEMISTRY:~at~:server.ccl.net Subject: Re: CCL:SOMFA2 TF2 Files Problems In-Reply-To: <001901beb812$21a29da0$0100a8c0 # - at - # brain> Message-ID: MIME-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII Dear Dr Klinsky, If you have program Tsar(TM) installed in any workstation, you can use it to export structures as .css, which samfa2 will easily read. I have notice the same problems you reported, and this was the only solution I have found. On Wed, 16 Jun 1999, Alexander Klinsky wrote: > Dear Colleagues ! > > > We have just begun using SOMFA2 and were unfortunately not able to generate > the required tf2 files from our structures which are available as pdb files > after superpositioning. > > We did the following without success: > > 1. Convert the PDB file to CSSR Format using Babel 1.6 then convert it with > the included conversion utility -> Error message: Fractional coordinates not > supported > 2. Generate a CSSR file using molden 3.5 -> The same error message > > > Does anybody know the detailed structure of the tf2 files or how to generate > such files form PDB or anything else. > > Kind regards, Alexander Klinsky > Institute of theoretical chemistry > University of Vienna > Austria > > > > > -= This is automatically added to each message by mailing script =- > CHEMISTRY ":at:" ccl.net -- To Everybody | CHEMISTRY-REQUEST ":at:" ccl.net -- To Admins > MAILSERV*- at -*ccl.net -- HELP CHEMISTRY or HELP SEARCH > CHEMISTRY-SEARCH%!at!%ccl.net -- archive search | Gopher: gopher.ccl.net 70 > Ftp: ftp.ccl.net | WWW: http://www.ccl.net/chemistry/ | Jan: jkl {*at*} ccl.net > > > > > > Best wishes, Andre Mauricio de Oliveira VOICE +55-031-374-1325 +55-031-499-5765 FAX +55-031-499-5700 Laboratorio de QSAR e Modelagem Molecular Nucleo de Estudos em Quimica Medicinal (NEQUIM) NEQUIM's Homepage: http://www.qui.ufmg.br/~nequim Departamento de Quimica ICEx Federal University of Minas Gerais Av Antonio Carlos 6627 Pampulha ZIP CODE 31270-901 Belo Horizonte MG Brazil