From chemistry-request -x- at -x- server.ccl.net Wed Apr 3 12:37:25 2002 Received: from cse.nd.edu ([129.74.25.101]) by server.ccl.net (8.11.6/8.11.0) with ESMTP id g33HbPp24292 for ; Wed, 3 Apr 2002 12:37:25 -0500 Received: from dylan.cse.nd.edu (ako#* at *#dylan.cse.nd.edu [129.74.32.170]) by cse.nd.edu (8.11.2/8.11.2) with ESMTP id g33HbJh06922 for ; Wed, 3 Apr 2002 12:37:19 -0500 (EST) Received: from localhost (ako*- at -*localhost) by dylan.cse.nd.edu (8.11.2/8.10.1) with ESMTP id g33HbGa12903 for ; Wed, 3 Apr 2002 12:37:16 -0500 (EST) Date: Wed, 3 Apr 2002 12:37:16 -0500 (EST) From: Alice NgarKit Ko To: chemistry \\at// ccl.net Subject: CHARMM missing coordinates Message-ID: MIME-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII Hi, I have a pdb file with only oxygen atoms. I used hbuild to create the hydrogen atoms to create a water box. But in the final pdb file, all the hydrogen atoms have 9999 as the coordinates. Any idea on how to correct that? Thanks Alice