From chemistry-request /at\server.ccl.net Wed Apr 3 12:56:30 2002 Received: from nori.rl.ac.uk ([130.246.135.154]) by server.ccl.net (8.11.6/8.11.0) with ESMTP id g33HuTp24790 for ; Wed, 3 Apr 2002 12:56:30 -0500 Received: from kohn.nd.rl.ac.uk.nd.rl.ac.uk (kohn.nd.rl.ac.uk [130.246.48.218]) by nori.rl.ac.uk (8.11.1/8.11.1) with ESMTP id g33Hu9V01493; Wed, 3 Apr 2002 18:56:15 +0100 MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Message-ID: <15531.16953.867937.992101(+ at +)kohn.nd.rl.ac.uk> Date: Wed, 3 Apr 2002 18:56:09 +0100 To: "Sue Heavner" Cc: Subject: CCL:convergence of MD simulations In-Reply-To: References: X-Mailer: VM 7.03-rfhacked under 21.4 (patch 4) "Artificial Intelligence" XEmacs Lucid From: "Keith Refson" Sue Heavner writes: > Dear CCL members: > I read that in NVE simulations, the ratio of RMS fluctuations of > the potential and kinetic energies is an indication > of convergence of energy, with RMS(PE)/RMS(KE) = 0.01 indicating a > satisfactory level of global energy stabilization. Is there such a > test for NTP simulations? If you are using a Hamiltonian-derived set of equations for the NTP simulation (such as Nose/Parrinello-Rahman or Nose/Andersen) then the answer is yes -- just use the conserved Hamiltonian in place of the energy. Note that you can't do this directly for the common Nose-Hoover formulation, though Frenkel and Smit (p139) suggest a way of reconstructing a conserved quantity with a little extra work in solving for the s variable. Keith Refson -- Dr Keith Refson, Building R3 Rutherford Appleton Laboratory Chilton Didcot Oxfordshire OX11 0QX T: 01235 446652 K.Refson-: at :- F: 01235 445720 :~at~:rl.ac.uk