From chemistry-request $#at#$ server.ccl.net Fri Jun 7 20:56:08 2002 Received: from ns1.scripps.edu ([192.42.82.59]) by server.ccl.net (8.11.6/8.11.0) with ESMTP id g580u7L20515 for ; Fri, 7 Jun 2002 20:56:07 -0400 Received: from antigen.scripps.edu (antigen.scripps.edu [137.131.200.100]) by ns1.scripps.edu (8.11.6/TSRI-4.2rx) with SMTP id g580u6V06680 for ; Fri, 7 Jun 2002 17:56:06 -0700 (PDT) Received: from relay2.scripps.edu(137.131.200.30) by antigen.scripps.edu via csmap id 25747; Fri, 07 Jun 2002 17:52:00 -0700 (PDT) Received: from goliath.scripps.edu (goliath.scripps.edu [137.131.108.88]) by relay2.scripps.edu (8.11.6/TSRI-4.2.1rAV) with ESMTP id g580ttc04836; Fri, 7 Jun 2002 17:55:55 -0700 (PDT) Received: from aaron (aaron [137.131.108.91]) by goliath.scripps.edu (SGI-8.9.3/TSRI-3.0.1) with SMTP id RAA66216; Fri, 7 Jun 2002 17:55:54 -0700 (PDT) Message-Id: <200206080055.RAA66216 ^at^ goliath.scripps.edu> Date: Fri, 7 Jun 2002 17:55:54 -0700 (PDT) From: Michel Sanner Reply-To: Michel Sanner Subject: CCL:solvent accessibility To: reche#* at *#research.dfci.harvard.edu, garrett#* at *#scripps.edu Cc: chemistry ":at:" ccl.net MIME-Version: 1.0 Content-Type: TEXT/plain; charset=us-ascii Content-MD5: /TE4WzxCx2w6JE8nMSW5mw== X-Mailer: dtmail 1.3.0 -: at :-(#)CDE Version 1.4.2 SunOS 5.8 sun4u sparc > Hi all, > does anyone know of a good unix program to calculate the percentage of > the area that is accessible/buried for every residue/side chain in a pdb > file? are you interested in the percentage of the area buried by atoms in the same molecule on the total surface of the residue ? or by the percentage of the accessible area buried by another molecule ? ----------------------------------------------------------------------- Michel F. Sanner Ph.D. The Scripps Research Institute Assistant Professor Department of Molecular Biology 10550 North Torrey Pines Road Tel. (858) 784-2341 La Jolla, CA 92037 Fax. (858) 784-2860 sanner:~at~:scripps.edu http://www.scripps.edu/sanner -----------------------------------------------------------------------