From chemistry-request-: at :-server.ccl.net Thu Aug 1 22:33:45 2002 Received: from web12804.mail.yahoo.com ([216.136.174.39]) by server.ccl.net (8.11.6/8.11.0) with SMTP id g722Xjf25995 for ; Thu, 1 Aug 2002 22:33:45 -0400 Message-ID: <20020802023345.77707.qmail[ AT ]web12804.mail.yahoo.com> Received: from [203.87.150.242] by web12804.mail.yahoo.com via HTTP; Thu, 01 Aug 2002 19:33:45 PDT Date: Thu, 1 Aug 2002 19:33:45 -0700 (PDT) From: amor san juan Subject: Re: CCL:Segmentation fault error in Autodock To: "Herron, Steven" Cc: chemistry {*at*} ccl.net In-Reply-To: <4E4792C2A56F9242A6E1807025B2693E663DBE- at -e2k2.AD.FULLERTON.EDU> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Dear Herron: If your platform is Linux, do stacksize unlimited by typing "ulimit -s 66666" in prompt area where your working. Segmentation fault crashed the program due to its small size. I experienced this before, and that is what I did. Amor --- "Herron, Steven" wrote: > > Dear CCLers, > > I need some help with autodock. I keep getting > a segmentation fault error when I run autodock. The > error only occurs when I use the genetic algorithm > and only on certain protein files. It is not the > ligand file because the ligand docks successfully > when I use a different protein. The protein and the > ligand dock successfully when I use the Simulated > Annealing algorithm, but I really like the Genetic > algorithm with a local search (GALS). I cannot > find the difference between the protein files that > run and the ones that don't. > I have also seen this occur when I try to add a > co-factor to the protein file. > > Any assistance is appreciated > > > Autodock runs initially but crashes once it starts > the genetic algorithm (as shown below) > > > >... > >... > BEGINNING LAMARCKIAN GENETIC ALGORITHM DOCKING > > Run: 1 / 10 > Updating Second Time-dependent Seed Now. > Seeds: 157989 1027642588 > Date: Thu Jul 25 17:16:28 2002 > > (this is the end of the output file) > > > Segmentation fault (core dumped) > > > Thanks in Advance, > > Steven R. Herron > sherron ^at^ fullerton.edu > > > -= This is automatically added to each message by > mailing script =- > CHEMISTRY*- at -*ccl.net -- To Everybody | > CHEMISTRY-REQUEST ":at:" ccl.net -- To Admins > Ftp: ftp.ccl.net | WWW: > http://www.ccl.net/chemistry/ | Jan: jkl*- at -*ccl.net > > > > > __________________________________________________ Do You Yahoo!? Yahoo! Health - Feel better, live better http://health.yahoo.com