From chemistry-request /at\ccl.net Thu Jan 29 06:16:55 2004
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In-Reply-To: <3B5A92DA-522A-11D8-BB41-000A957D73C4|at|chemistry.ucsc.edu>
References: <3B5A92DA-522A-11D8-BB41-000A957D73C4|at|chemistry.ucsc.edu>
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Cc: chemistry|at|ccl.net
From: Kim Branson <kim.branson|at|csiro.au>
Subject: dock for osx.
Date: Thu, 29 Jan 2004 22:18:43 +1100
To: <wgscott|at|chemistry.ucsc.edu>
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Hi all,

for the many many curious people the steps to compile dock for osx are

You need to include <sys/time.h> before <sys/resource.h>,  you
  need to include <sys/types.h>  in parm.c
i.e

#include <time.h>
#include <sys/time.h>
#include <sys/types.h>
#include <sys/resource.h>
#include "define.h"
#include "utility.h"
#include "global.h"
#include "parm.h"

  add -lgcc to your link line or link against /usr/lib/libgcc.a.

I havent tried compiling with different apple specific gcc and g77 
flags yet, or pushing the optimisation. But this does produce a working 
version of DOCK and GRID.

cheers

kim





On 29/01/2004, at 6:10 PM, <wgscott|at|chemistry.ucsc.edu> wrote:

> You need to use
>
>
>
> -lcc_dynamic
>
>
>
>
> If you get it to work, would you be kind enough to send a summary of 
> what it takes?
>
>
>
> Thanks.
>
>
>
>
> William G. Scott
>
>
>
> Associate Professor
>
> Department of Chemistry and Biochemistry
>
> and The Center for the Molecular Biology of RNA
>
> Sinsheimer Laboratories
>
> University of California at Santa Cruz
>
> Santa Cruz, California 95064
>
> USA
>
>
>
> phone: +1-831-459-5367 (office)
>
> +1-831-459-5292 (lab)
>
> fax: +1-831-4593139 (fax)
>
> url: http://chemistry.ucsc.edu/~wgscott/
>
>
>
>
>  
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Hi all, 


for the many many curious people the steps to compile dock for osx are


<smaller><x-tad-smaller>You need to include <<sys/time.h> before
<<sys/resource.h>,  you</x-tad-smaller></smaller>

<smaller><x-tad-smaller> need to include <<sys/types.h>  in parm.c

i.e

</x-tad-smaller></smaller>

#include <<time.h>

#include <<sys/time.h>

#include <<sys/types.h>

#include <<sys/resource.h>

#include "define.h"

#include "utility.h"

#include "global.h"

#include "parm.h"


 add -lgcc to your link line or link against /usr/lib/libgcc.a.


I havent tried compiling with different apple specific gcc and g77
flags yet, or pushing the optimisation. But this does produce a
working version of DOCK and GRID.  


cheers


kim 






On 29/01/2004, at 6:10 PM, <<wgscott|at|chemistry.ucsc.edu> wrote:


<excerpt>You need to use




<bold><fixed><fontfamily><param>Courier New</param><color><param>FFFF,0000,0000</param><bigger><bigger><bigger><bigger><bigger><bigger>-lcc_dynamic</bigger></bigger></bigger></bigger></bigger></bigger></color></fontfamily></fixed></bold>





<smaller><smaller><x-tad-smaller>If you get it to work, would you be
kind enough to send a summary of what it takes?</x-tad-smaller></smaller></smaller></excerpt><excerpt>




<smaller><smaller><x-tad-smaller>Thanks.</x-tad-smaller></smaller></smaller></excerpt><excerpt>





<smaller><smaller><x-tad-smaller>William G. Scott</x-tad-smaller></smaller></smaller></excerpt><excerpt>




<smaller><smaller><x-tad-smaller>Associate Professor</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>Department of Chemistry and
Biochemistry</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>and The Center for the Molecular
Biology of RNA</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>Sinsheimer Laboratories</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>University of California at Santa Cruz</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>Santa Cruz, California 95064</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>USA</x-tad-smaller></smaller></smaller></excerpt><excerpt>




<smaller><smaller><x-tad-smaller>phone: +1-831-459-5367 (office)</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>+1-831-459-5292 (lab)</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>fax: +1-831-4593139 (fax)</x-tad-smaller></smaller></smaller></excerpt><excerpt>


<smaller><smaller><x-tad-smaller>url:
http://chemistry.ucsc.edu/~wgscott/</x-tad-smaller></smaller></smaller></excerpt><excerpt>





 </excerpt>
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