From owner-chemistry%!at!%ccl.net Thu Jun 10 20:32:00 2021 From: "Piotr Gauden gaudi*umk.pl" To: CCL Subject: CCL: MM/MD program for Windows PC Message-Id: <-54390-210610181206-6868-NOLTPNxHAmJVfky3lMKA9g!^!server.ccl.net> X-Original-From: Piotr Gauden Content-Disposition: inline Content-Type: text/plain; charset=utf-8; format=flowed; DelSp=Yes Date: Fri, 11 Jun 2021 00:11:53 +0200 MIME-Version: 1.0 Sent to CCL by: Piotr Gauden [gaudi[#]umk.pl] Dear Anatoli, I recommend applet. https://physics.weber.edu/schroeder/md/InteractiveMD.html You can also collect numerical values for the different virtual experiments. Best regards, Piotr Cytowanie "Brian Skinn brian.skinn : gmail.com" : > Anatoli, > > I did a quick Google search for "interactive molecular model of > condensation", and discovered this: http://mw.concord.org/nextgen/ > > I have no experience with them at all, and cannot make any particular > recommendation. The demonstration on the landing page seems exactly like > what you describe, though. I'm not sure how you would go about making use > of their product...it might involve becoming one of their "partners"? > > > Good luck, > Brian > > On Thu, Jun 10, 2021 at 3:30 PM Anatoli Korkin korkin.{=}.nanoandgiga.com < > owner-chemistry{=}ccl.net> wrote: > >> I need something which students and teachers with no professional >> chemistry background could use as demo lessons of "virtual chemistry". Like >> a virtual lab. The best analogy is chemistry demonstration in the class by >> mixing some liquids with a visual result: color change, gas or sediment, >> etc. In this case the visual effects would be conformation changes or >> formation of a molecular cluster (temperature down) or cluster evaporation >> (temperature up). There are plenty movies on youtube of any level of >> complexity but they would not provide a hands-on experience and ability to >> change some parameters to get feeling of doing a "chemistry experiment". >> >> Best regards, >> Anatoli Korkin >> Adjunct Professor >> School of Molecular Sciences >> Arizona State University >> webapp4.asu.edu/directory/person/1169125 >> President of Nano and Giga Solutions Inc. >> nanoandgiga.com/board/korkin.html >> >> >> >> On Wed, Jun 9, 2021 at 7:48 PM Elaine Meng meng{=}cgl.ucsf.edu < >> owner-chemistry#%#ccl.net> wrote: >> >>> >>> Sent to CCL by: Elaine Meng [meng-$-cgl.ucsf.edu] >>> If this is for noncommercial use, you could take a look at the Sophia >>> plugin to UCSF Chimera; both are free downloads for noncommercial purposes: >>> >>> https://www.rbvi.ucsf.edu/chimera/plugins/plugins.html#sophia >>> https://sophia-web.appspot.com/ >>> https://www.rbvi.ucsf.edu/chimera/index.html >>> >>> However, Sophia may be intended more to teach principles of MD using >>> simple systems, than to teach chemistry per se. Also developed mainly for >>> Mac although documentation says most features also work on Windows, and >>> while it may be easy for you to install, not necessarily so for students. >>> >>> Best, >>> Elaine >>> ----- >>> Elaine C. Meng, Ph.D. >>> UCSF Chimera(X) team >>> Department of Pharmaceutical Chemistry >>> University of California, San Francisco >>> >>> >>> > On Jun 9, 2021, at 7:05 AM, Anatoli Korkin korkin-x-nanoandgiga.com >>> wrote: >>> > >>> > >>> > Sent to CCL by: "Anatoli Korkin" [korkin^nanoandgiga.com] >>> > I am looking for a free MM/MD program easy to install and operate in >>> Windows PC >>> > environment to design some chemistry lessons for high school students, >>> e.g. >>> > conformational changes and condensation/evaporation with temperature >>> change. >>> > Even better if someone, who is expert in MM/MD, would be interested to >>> join the >>> > project and develop some video lessons. See examples on my youtube >>> channel >>> > "Atomic Scale Design for Newbies": >>> > >>> > https://www.youtube.com/channel/UCQZL1UyyBo7HuN-FA286YWA >>> > >>> > Thank you for your advice and consideration! >>> > >>> > Sincerely, >>> > Anatoli Korkin>> E-mail to subscribers: CHEMISTRY#%#ccl.net or use:>> >>> E-mail to administrators: CHEMISTRY-REQUEST#%#ccl.net or use>> >>> >>> ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- dr hab. Piotr A. Gauden, prof. UMK gaudi+/-uni.torun.pl Nicholas Copernicus University, Chair of Materials Chemistry, Adsorption and Catalysis Carbon Materials Application in Electrochemistry and Environmental Protection Reserch Group 87-100 Torun Gagarin St. 7 Tel. (+48) (056) 611-45-12 Fax. (+48) (056) 654-24-77 ORCID: https://orcid.org/0000-0002-0474-3771 Webpage: https://www.researchgate.net/profile/Piotr_Gauden GoogleScholar: https://scholar.google.pl/citations?user=BB4IueMAAAAJ&hl=pl ------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------