FRODO and DNA software
I have two questions concerning software that I am trying to
1) Is there an SGI version of FRODO, and if so, who should I
contact to obtain it?
2) Does anyone know of any programs that can build non-standard
DNA conformations? I am interested in unwound backbone
geometries that can be used to model intercalation, as well
as the ability to generate propeller twists, tilting, and sliding
deformations of the base pairs to use as starting points for
minimization or dynamics.
Please send responses to me, and I will share them.