The book entitiled "Pharmacophore Perception, Development, and Use
in Drug Design" has been released . It should appear in Barnes
& Noble and Amazon sites shortly. Meanwhile you can contact the
publisher for a copy at info -AatT- iul-press.com
Below is the Table of Contents...
Preface
O.F.Güner Part I: The Origins of Pharmacophore
Research 1. Evolution of the Pharmacophore
Concept in Pharmaceutical Research
P.Gund Part II: Analog-Based
Pharmacophores 2. Manual Pharmacophore Generation:
Visual Pattern Recognition
O.F.Güner 3. Pharmacophore Definition Using the
Active Analog Approach D.D.Beusen,
G.R.Marshall Automated Pharmacophore Development
Systems 4. DISCO: What We Did Right and What
We Missed Y.C.Martin 5. HipHop: Pharmacophores Based on
Multiple Common-Feature Alignments
O.A.Clement, A.T.Mehl 6. GASP: Genetic Algorithm Superposition
Program G.Jones, P.Willett,
R.C.Glen 7. Exploring Pharmacophores with Chem-X
S.J.Cato Predictive Model Development - 3D
QSAR 8. Apex-3D: Activity Prediction
Expert System with 3D QSAR E.R.Vorpagel,
V.E.Golander 9. Pharmacophore Models and Comparative
Molecular Field Analysis (CoMFA)
R.D.Clark, J.M.Leonard, A.Strizhev 10. HypoGen: An Automated System for
Generating Predictive 3D Pharmacophore Models
H.Li, J.M.Sutter, R.Hoffmann Applications in Drug Design 11. Metric for Analyzing Hit Lists
and Pharmacophores O.F.Güner,
D.R.Henry 12. Strategies in Database Mining and
Pharmacophore Development O.F.Güner,
M.Waldman,
R.Hoffmann, J-H.Kim 13. Pharmacophore Modeling by Automated
Methods: Possibilities and Limitations
M.Langgård, B.Bjørnholm,
K.Gundertofte 14.
Database Mining Using Pharmacophore Models to Discover Novel Structural
Prototypes J.J.Kaminski, D.F.Rane,
M.L.Rothofsky 15. Predicting
Drug-Drug Interactions in
Silico using Pharmacophores: A Paradigm
for the Next Millenium S.Ekins, B.J.Ring,
G.Bravi, J.H.Wikel, S.A.Wrighton
16. Feature-Based Pharmacophores: Applications to Some Biological Systems
R.Hoffmann, H.Li, T.Langer 17. The Design and Pharmacophore
Definition of Retinoid-X-Receptor Specific Ligands
S.K.White Part III: Receptor-Based
Pharmacophores 18. Receptor-based Pharmacophore
Perception and Modeling
C.M.Venkatachalam, P.Kirchhoff,
M.Waldman 19. Pharmacophore-Based Molecular
Docking B.E.ThomasIV, D.Joseph-McCarthy,
J.C.Alvarez Applications in Drug Design 20. The Use of Multiple Excluded
Volumes Derived from X-Ray Crystallographic Structures in 3D Database
Searching and 3D-QSAR M.Gillner,
P.Greenidge 21. Docking-Derived Pharmacophores from
Models of Receptor-Ligand Complexes
R.Griffith, J.B.Bremner, B.Coban 22. Technique for Developing a
Pharmacophore Model That Accommodates Inherent Protein Flexibility: An
Application to HIV-1 Integrase
K.M.Masukawa, H.A.Carlson,
J.A.McCammon Part IV: New Algorithms in
Pharmacophore Development 23. Pharmacophores Derived from the 3D
Substructure Perception S.Handshuh,
J.Gasteiger 24. The Electron-Conformational Method
of Identification of Pharmacophore and Anti-Pharmacophore Shielding
I.B.Bersuker, S.Bahceci,
J.E.Boggs 25. Development and Optimization of
Property-Based Pharmacophores
A.G.Ozkabak, M.A.Miller, D.R.Henry,
O.F.Güner 26. Effect of Variable Weights and
Tolerances on Predictive Model Generation
J.M.Sutter, O.F.Güner, R.Hoffmann,
M.Waldman Part V: The Future of Pharmacophore
Research 27. Future Directions in Pharmacophore
Discovery J.H.VanDrie