CCL: Loop prediction - reconstruction of protein missing residues
- From: Ben Webb <ben~~salilab.org>
- Subject: CCL: Loop prediction - reconstruction of protein missing
- Date: Thu, 09 Mar 2006 09:31:41 -0800
Sent to CCL by: Ben Webb [ben-$-salilab.org]
Nuno Loureiro Ferreira nunolf**ci.uc.pt wrote:
I have some structures that I want to add some missing loops and
reconstruct some protein missing residues (these ones at the
terminals of the protein) .
My aim is to obtain the whole protein. I'm not so worried about if
the loop predictions are in close agreement with known loop
structures. Just want to make sure that the added residues/loops are
in good stereochemical conditions without steric clashes with
I'm searching for Linux or SGI software that could do the job. Want
to here some feedback on this subject, before choosing the soft pack.
You could use Modeller (http://salilab.org/modeller/) to achieve this. A
missing residues example is at
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle