CCL: ZDOCK

From: Deepangi Pandit <deepangi.pandit a gmail.com>
Subject: CCL: ZDOCK
Date: Thu, 22 Apr 2010 12:16:17 -0400

 Sent to CCL by: Deepangi Pandit [deepangi.pandit^^^gmail.com]
 Hi Tinna:
 Generally mark_sur will not work of following reasons
 1. Your input files are too close to each other - You can fix these by
 trying different initial orientations of two proteins
 2. You are using homology models and models are not optimized - refine
 your homology models
 All the best.
 Deepa
 On Thu, Apr 22, 2010 at 9:57 AM, Tina Kamma Lorger KammaCS=cf.ac.uk
 <owner-chemistry%%ccl.net> wrote:
 >
 > Sent to CCL by: "Tina  Kamma Lorger" [KammaCS]~[cf.ac.uk]
 > I downloaded ZDOCK in Linux Ubuntu and it seems to be running OK. However,
 I cannot get the mark_sur program to work (mark_sur prot.pdb prot1.pdb). Does
 anybody know what I can possibly be doing wrong please?
 > T
 >
 >
 >
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