- From: Deepangi Pandit <deepangi.pandit a gmail.com>
- Subject: CCL: ZDOCK
- Date: Thu, 22 Apr 2010 12:16:17 -0400
Sent to CCL by: Deepangi Pandit [deepangi.pandit^^^gmail.com]
Generally mark_sur will not work of following reasons
1. Your input files are too close to each other - You can fix these by
trying different initial orientations of two proteins
2. You are using homology models and models are not optimized - refine
your homology models
All the best.
On Thu, Apr 22, 2010 at 9:57 AM, Tina Kamma Lorger KammaCS=cf.ac.uk
> Sent to CCL by: "Tina Kamma Lorger" [KammaCS]~[cf.ac.uk]
> I downloaded ZDOCK in Linux Ubuntu and it seems to be running OK. However,
I cannot get the mark_sur program to work (mark_sur prot.pdb prot1.pdb). Does
anybody know what I can possibly be doing wrong please?
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