CCL: Release of R.E.D. Server 2.0



 Sent to CCL by: FyD [fyd : q4md-forcefieldtools.org]
 Dear Rick Venable,
 R.E.D. means RESP and ESP charge Derivation.
 
The R.E.D. Tools and R.E.D. Server do not only deal with _RESP_ charges but with _ESP_ charges using various algorithms used in MEP computation. And ESP charges are used in FFs different from AMBER FFs... Then, charge derivation is the first step - charge validation is done in a second step.
 See http://www.ncbi.nlm.nih.gov/pubmed/20574571 & references
 cited herein.
 This is why we wrote
 
"R.E.D. Server is a web service designed to automatically derive RESP and ESP charges, and to build force field libraries for new molecules/molecular fragments. R.E.D. Server provides to computational biologists involved in AMBER, CHARMM, GLYCAM & OPLS force field based biological studies the software and hardware required for charge derivation and force field library building."
 regards, Francois
 
 Sent to CCL by: "Venable, Richard (NIH/NHLBI) [E]"
 [venabler!=!nhlbi.nih.gov]
 
Given that RESP/ESP methods are **not** used for the development of CHARMM force fields (a fragment approach similar to OPLS is used), the compatibility of molecules with RESP-based charges with the rest of the CHARMM force fields is somewhat questionable. The use of other approaches, notably the CHARMM General force field (CGenFF), is recommended instead of ad hoc web servers for extending the CHARMM force field to new molecules.
 
I did not see anything on the q4md site which discussed this, or that gave any hints about validation of the molecular descriptions produced in the context of CHARMM and its distributed force fields.
 --
 Rick Venable     5635 FL/T906
 Membrane Biophysics Section
 NIH/NHLBI Lab. of Computational Biology
 Bethesda, MD  20892-9314   U.S.A.
 (301) 496-1905   venabler AT nhlbi*nih*gov
 
On 11/4/10 5:50 AM, "Barry Hardy barry.hardy*o*vtxmail.ch" <owner-chemistry**ccl.net> wrote:
 Sent to CCL by: FyD [fyd]*[q4md-forcefieldtools.org]
 Dear All,
 I am pleased to announce the release of R.E.D. Server 2.0.
 See http://q4md-forcefieldtools.org/REDS/.
 R.E.D. Server is a web service designed to automatically derive RESP
 and ESP charges, and to build force field libraries for new
 molecules/molecular fragments. R.E.D. Server provides to computational
 biologists involved in AMBER, CHARMM, GLYCAM & OPLS force field based
 biological studies the software and hardware required for charge
 derivation and force field library building.
 See http://q4md-forcefieldtools.org/REDS/faq.php
   &  http://q4md-forcefieldtools.org/REDS/news.php