CCL: a question about making a parm file containing damino acids with
LEaP
- From: "Yawen Li" <yl6c2[a]mail.missouri.edu>
- Subject: CCL: a question about making a parm file containing damino
acids with LEaP
- Date: Thu, 17 Nov 2011 12:50:04 -0500
Sent to CCL by: "Yawen Li" [yl6c2-#-mail.missouri.edu]
Hi,
I am a beginner of the AMBER program. In the molecule I want to study, there is
several D amino acids. But it seems to me that "source leaprc.ff99SB"
do not have any D amino acids. How can I fix this problem and generate AMBER
topology and coordinate files correctly?
By the way, I have to run the AMBER program on a university server, which means
I have limited authority to modify the program. If it's possible, can anyone
tell me how to fix this under my working directory.
Thanks a lot,
Yawen Li
Email: yl6c2~~mail.missouri.edu