CCL: Calulate RMSD
- From: Kyle Lutz <kyle.r.lutz]~[gmail.com>
- Subject: CCL: Calulate RMSD
- Date: Mon, 27 Feb 2012 16:30:17 -0500
Sent to CCL by: Kyle Lutz [kyle.r.lutz:-:gmail.com]
>> Sent to CCL by: "Fabio Coelho" [fabioamsc- -ig.com.br]
>> Hi all,
>>
>> I would like to know if there are some programs (free) that calculate
the
>> RMSD to docked ligands and the crystallographic.
Hi Fabio,
The open-source chemkit library can calculate the RMSD between two
molecules. See the rmsd() method of the MoleculeAligner class
(http://doc.chemkit.org/api/classchemkit_1_1_molecule_aligner.html).
Let me know if you have any questions or would like to see some example code.
Cheers,
Kyle