From owner-chemistry@ccl.net Mon May 16 08:37:00 2016 From: "David Shobe avidshobe-$-yahoo.com" To: CCL Subject: CCL: Not able to optimize structure - bisphosphole Message-Id: <-52204-160514164245-5269-L7ssUQkqTx/9VsHiSkcmHQ*_*server.ccl.net> X-Original-From: David Shobe Content-Type: multipart/alternative; boundary="----=_Part_2073303_152685841.1463258551881" Date: Sat, 14 May 2016 20:42:31 +0000 (UTC) MIME-Version: 1.0 Sent to CCL by: David Shobe [avidshobe|,|yahoo.com] ------=_Part_2073303_152685841.1463258551881 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Daniel-- A few questions, that may be useful to others even if not to me :-) First regarding the MM methods. =C2=A0The error message given is pretty gen= eric. =C2=A0Does the calculation produce any intermediate geometries, or do= es it crash on the first geometric-optimization step? =C2=A0If there are in= termediate geometries,does the energy decrease from step to step, or is the= re a sudden increase in energy? =C2=A0Do you even have an atom type and par= ameters for tungsten? =C2=A0Which MM force field are you using? [I would have advised opt=3Dcalcall as a last resort, but given the size of= your molecule (which is surely even bigger than the formula you actually w= rote implies: how many carbon atoms again? :-) I might have second thoughts= on that. =C2=A0Hopefully someone has a better idea.] About the semiemprical method (PM6). =C2=A0It appears from the error messag= e that you are not getting a decent wavefunction. =C2=A0Are you using guess= =3Dread to get the wavefunction from the checkpoint file in which you were = able to optimize with opt=3Dloose? =C2=A0(Or does guess=3Dread even work wi= th semiempirical methods?) =C2=A0Are you sure everything (especially the tu= ngsten moieties) are in the correct electronic state?=C2=A0 Hope this helps,--David Shobe =20 On Saturday, May 14, 2016 9:10 AM, Daniel Morales Salazar danielmoralessal= azar91]_[gmail.com wrote: =20 =20 Sent to CCL by: "Daniel=C2=A0 Morales Salazar" [danielmoralessalazar91*|*gm= ail.com] Hello,=20 I am trying to optimize a molecule with the chemical formula CH52O18P4S4W2,= which contains thiophenes-phospholes, phenyl groups, and=20 tungsten pentacarbonyl substituents. It is a large and especially bulky molecule. I have tried using MM and=20 Semi-empirical methods (PM6) unsuccessfully. The only converged trial so=20 far was one with the "loose" keyword using PM6, which crashed in the=20 following calculation with stricter parameters when I did not use the=20 keyword. I have tried the keywords calcfc, qc, cartesian, etc.=20 Any advice for these types of cases? Semi-empirical jobs crash with the message: "Symmetry turned off by external request. DSYEV returned Info=3D=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 2 IAlg=3D 2 N=3D= =C2=A0 =C2=A0 3 NDim=3D=C2=A0 =C2=A0 3 NE2=3D=C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0=20 2. Diagonalization in DiagDN failed." MM methods crash with the message: " Error termination request processed by link 9999." I have the feeling that the initial geometries are not so bad even! Thank= =20 you very much for your help. Sincerely, Daniel Morales Salazar -=3D This is automatically added to each message by the mailing script =3D-=C2=A0 =C2=A0 =C2=A0=C2=A0 =C2=A0 =C2=A0Subscribe/Unsubscribe:=20 =C2=A0 =C2=A0 =C2=A0Job: http://www.ccl.net/jobs=20=C2=A0 =C2=A0 =C2=A0------=_Part_2073303_152685841.1463258551881 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
<= div id=3D"yiv3733130765yui_3_16_0_ym19_1_1463251158989_22609">Daniel--

<= div id=3D"yiv3733130765yui_3_16_0_ym19_1_1463251158989_22609">A few questio= ns, that may be useful to others even if not to me :-)

First regarding the MM method= s.  The error message given is pretty generic.  Does the calculat= ion produce any intermediate geometries, or does it crash on the first geom= etric-optimization step?  If there are intermediate geometries,does th= e energy decrease from step to step, or is there a sudden increase in energ= y?  Do you even have an atom type and parameters for tungsten?  W= hich MM force field are you using?

[I would have advised opt=3Dcalcall a= s a last resort, but given the size of your molecule (which is surely even = bigger than the formula you actually wrote implies: how many carbon atoms a= gain? :-) I might have second thoughts on that.  Hopefully someone has= a better idea.]

About the semiemprical method (PM6). &nb= sp;It appears from the error message that you are not getting a decent wave= function.  Are you using guess=3Dread to get the wavefunction from the= checkpoint file in which you were able to optimize with opt=3Dloose?  = ;(Or does guess=3Dread even work with semiempirical methods?)  Are you= sure everything (especially the tungsten moieties) are in the correct elec= tronic state? 

Hope this helps,
--David Shobe








On Saturday, May 14, 201= 6 9:10 AM, Daniel Morales Salazar danielmoralessalazar91]_[gmail.com <ow= ner-chemistry]-[ccl.net> wrote:


<= br clear=3D"none">Sent to CCL by: "Daniel  Morales Salazar" [danielmor= alessalazar91*|*gmail.com]
Hello,

I am trying to optimize a molecule with the chemical formula= CH52O18P4S4W2, which contains thiophenes-phospholes, phenyl groups, and tungsten pentacarbonyl substituents.
It is a large and especially bulky molecule. I have tried u= sing MM and
Semi-empirical methods (PM6) unsuccessfully.= The only converged trial so
far was one with the "loose= " keyword using PM6, which crashed in the
following calc= ulation with stricter parameters when I did not use the
= keyword. I have tried the keywords calcfc, qc, cartesian, etc.

Any advice for these types of cases?

Semi-empirical jobs crash with the message:

"Symmetry turned off by external request. DSYEV returned Info=3D          = 2 IAlg=3D 2 N=3D    3 NDim=3D    3 NE2=3D   = ;      
2.
Diagonaliz= ation in DiagDN failed."

MM methods cr= ash with the message:

" Error terminat= ion request processed by link 9999."

I= have the feeling that the initial geometries are not so bad even! Thank you very much for your help.

Sincerely,

Daniel Morales Sa= lazar



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