CCL:G: About checkpoint problems after using GaussView 5.0



Dear Daniel,
 Checkpoint files are indeed usable only on the computer you have generated
 it, or on some identical node. However, usually I managed, for example, to
 read geometry for use in restarted or next job on other type node. However,
 formchk can be done only on the same node as the calculation during which
 .CHK was produced. Maybe GaussView tries to launch formcheck on your
 "control node" instead...
 With best wishes,
 Igors Mihailovs (engineer / PhD student)
 Institute of Solid State Physics
 University of Latvia
 2016-05-23 22:05 GMT+03:00 Daniel Morales Salazar danielmoralessalazar91(!)
 gmail.com <owner-chemistry..ccl.net>:
 >
 > Sent to CCL by: "Daniel  Morales Salazar"
 [danielmoralessalazar91:
 > gmail.com]
 > Hello,
 >
 > Typically I send my  jobs using Gaussian 09 by creating text scripts in
 > the batch mode using UNIX's vi editor. Lately, SLURM gives my jobs
 > extremely low priorities. I then decided to try the interactive mode,
 > which allows me to use computational time for shorter times. I do not
 > know how to use scripts in the interactive mode so I decided to use
 > Gaussview 5.0.8 to send my jobs. Whenever I want to restart those jobs
 > (given that the interactive session closes), the checkpoint files are
 > corrupted in like 99% of the cases. I get the following message:
 >
 > "$ module load gaussian/g09.d01
 > $ module load gaussian/gv-5.0.8
 > $ formchk file.chk file.fchk
 >  Read checkpoint file file.chk
 >  Write formatted file file.fchk
 >  Missing data for FChkPn.
 >  Error termination via Lnk1e at Mon May 23 20:32:58 2016.
 > Segmentation fault (core dumped)"
 >
 > In the few cases that formchk works, when I try to visualize the
 > checkpoint file in Gaussview, a message like this one appears:
 >
 > "CConnectionGFCHK::Parse_GFCH() Missing or bad data: Alpha Orbital
 > Energies Line Number 574"
 >
 > The checkpoint files get corrupted even when re-sending the jobs using
 > the interactive mode. I have tried reading into the issue but I can't
 > find any input online. Does this have to do with the fact that the check
 > point file is only usable in the specific cores I was assigned when
 > starting the job? can anybody help me solving this issue please?
 >
 > Thanks.
 >
 > Sincerely,
 >
 > Daniel>
 >
 >