TRANSITION STATE LOCATION
On the subject of transition states, ONE negative frequency indicates
a transition state. (Since the frequencies are computed directly
from the force constants, it is not neccessary to check them as well.)
If you have more than one, a true transition state has not been
reached. If there are two, you are on a "ridgeline". You must
analyze the motion of the smaller value and "goose" the geometry
along this motion and re-optimize. (Yes, I know, incredibly ted-
ious.) Very small negative frequencies usually correspond to
things like methyl rotations. I don't know the exact structure you
are working with, but that is likely.
If you have more than two negative frequencies, this can be a problem.
People doing reactions spend the majority of their time stomping
out spurious negative frequencies. As if that wasn't enough, you
must make sure that your TS corresponds to the one for the reaction
you are examining. To do this, examine the motions associated with
the ONE negative frequency and again "goose" the geometry along
these coordinates. If you end up with product, that's good. You
can also goose it backwards and hopefully end up with reactant.
I have mentioned twice "analyze the motion". You can do this is
several ways. After doing a FORCE calculation, the cartesian
components of motion for each atom are printed under the force
constant listing. Making sure that the molecule is oriented the
way the force calculation has indicated (its in there) just look
at what the atoms with large components actually do for a partic-
ular vibration. The second method (the one I use) is to perform
an LTRD calculation. This will give you the components of nega-
tive frequencies in internal coordinates. This is usually much
easier to interpret. Again figure out which components are large
and count optimizable geometric parameters to match them up.
Hope this abbreviated version helps.
Andy Holder
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DR. ANDREW HOLDER
Assistant Professor of Computational/Organic Chemistry
Department of Chemistry || BITNET Addr: AHOLDER \\at// UMKCVAX1
University of Missouri - Kansas City || Internet Addr: aholder \\at//
vax1.umkc.edu
Spencer Chemistry, Room 502 || Phone Number: (816) 235-2293
Kansas City, Missouri 64110 || FAX Number: (816) 235-1717
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