Helix Dipole
Dear Net-people,
In response to:
********************************************************************
Dear Networkers
Is there any way to calculate the dipole on a helix
in a protein. Several papers I have read recently talk
about the importance of the helix-dipole but none quantify
this value.
THANKS
Margaret Wong
********************************************************************
In response to the above, fewer and fewer people I think believe in
the so-called macrodipole anymore. A nice alternative was presented
by Aqvist and Warshel cited below.
AQVIST J; LUECKE H; QUIOCHO FA; WARSHEL A.
DIPOLES LOCALIZED AT HELIX TERMINI OF PROTEINS STABILIZE CHARGES.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA, 1991 MAR, V88 N5:2026-2030.
---------------------------------------------------------------------------------
stereo pair stereo pair Gerard M. Jensen, Ph.D.
The Scripps Research Institute-MB8
H H H H Department of Molecular Biology
\ | | \ 10666 N. Torrey Pines Road
H--C---C--H H---C---C---H La Jolla, California, 92037
/ | | / gerard -x- at -x- scripps.edu
H H H H Ph: 619-554-4325 Fax: 619-554-6188
---------------------------------------------------------------------------------