Re: CCL:3D to 2D coordinate compression
- From: "M. Nicklaus" <mn1 #*at*#
helix.nih.gov>
- Subject: Re: CCL:3D to 2D coordinate compression
- Date: Wed, 13 Mar 2002 12:24:00 -0500 (Eastern Standard Time)
On Wed, 13 Mar 2002, Gerry Lushington wrote:
> At the risk of sounding retrograde, does anyone know of a good (preferably
> simple, UNIX based) program to project 3D coordinates down to reasonable
> looking 2D structures? Obviously a trivial suggestion could be to
> arbitrarily wipe out one axis, but as you can imagine that can produce some
> pretty awful looking tangles.
CACTVS (see http://www2.chemie.uni-erlangen.de/software/cactvs/) does a
very good job at this. You can either use the graphical Structure Browser
(csbr), or write a simple script.
Marc
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Marc C. Nicklaus, Ph.D. NIH/NCI at Frederick
E-mail: mn1 #*at*# helix.nih.gov Bldg 376, Rm 207
Phone: (301) 846-5903 376 Boyles Street
Fax: (301) 846-6033 FREDERICK, MD 21702 USA
Head, Computer-Aided Drug Design MiniCore Facility
Laboratory of Medicinal Chemistry, Center for Cancer Research,
National Cancer Institute at Frederick, National Institutes of Health
http://rex.nci.nih.gov/RESEARCH/basic/medchem/mcnbio.htm
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