Hi,
I want to develop a simple flexible model for my ligands - not all atom
model. This is to study steric interactions between that model and
all atom protein. I came accross the 'rod modeling of DNA' - is there
anything for large/long flexible ligands? Any suggestion/pointer would
be highly appreciated.
Pradipta
Dr. Pradipta Bandyopadhyay
Dept. of Pharmaceutical Chemistry
University of California, San Francisco (UCSF)