From chemistry-request@server.ccl.net Wed Mar 26 07:03:30 2003 Received: from mailserv.unb.ca ([131.202.3.23]) by server.ccl.net (8.11.6/8.11.0) with ESMTP id h2QC3UN21676 for ; Wed, 26 Mar 2003 07:03:30 -0500 Received: from pop.unb.ca (root@newpop.unb.ca [131.202.3.46]) by mailserv.unb.ca (8.12.6/8.12.6) with ESMTP id h2QC3LWw019612; Wed, 26 Mar 2003 08:03:21 -0400 Received: from webmail1 (webmail1.unb.ca [131.202.130.26]) by pop.unb.ca (8.11.6+Sun/8.11.6) with ESMTP id h2QC3LY18438; Wed, 26 Mar 2003 08:03:21 -0400 (AST) X-WebMail-UserID: l72k6 Date: Wed, 26 Mar 2003 08:03:21 -0400 Sender: Robert Flight From: Robert Flight To: AutoDockList , Computational Chemistry List X-EXP32-SerialNo: 00003025, 00003442 Subject: Update--ADT error message - "No Atom records" - solution Message-ID: <3E9A73FD@webmail1> Mime-Version: 1.0 Content-Type: text/plain; charset="US-ASCII" Content-Transfer-Encoding: 7bit X-Mailer: WebMail (Hydra) SMTP v3.61.08 X-UNB-VirusScanner: Found to be clean X-UNB-SpamDetails: Wow, the number of helpful responses to this post was great. Most everyone had the same suggestion, getting rid of the extra carriage return lines that Windows likes to insert into the file in addition to the newline character that is present in Unix. Many people had suggestions for fixing this without re-creating the Mol2 files. Utilities suggested include: > From Unix- dos2unix to_dos to_unix fromdos recode > From Windows- U2d.exe D2u.exe The only one I have tried is "dos2unix", and it works very well. After running this on my "Windows" files, I have no problems with them in the Linux version of ADT. Thanks again to everyone for your suggestions. -Robert ******************************** Robert Flight Masters Student Department of Chemistry University of New Brunswick Fredericton, NB Canada E3B 6E2 e-mail: robert.flight@unb.ca ******************************** "A computer terminal is not some clunky old television with a typewriter in front of it. It is an interface where the mind and body can connect with the universe and move bits of it about." -- Hitch Hikers Guide to the Galaxy