From chemistry-request@ccl.net Wed Apr 7 19:29:58 2004 Received: from ms-smtp-02-eri0.ohiordc.rr.com (ms-smtp-02-smtplb.ohiordc.rr.com [65.24.5.136]) by server.ccl.net (8.12.8/8.12.8) with ESMTP id i380TwjR005280 for ; Wed, 7 Apr 2004 19:29:58 -0500 Received: from HOME (dhcp024-208-195-225.indy.rr.com [24.208.195.225]) by ms-smtp-02-eri0.ohiordc.rr.com (8.12.10/8.12.7) with SMTP id i380Txf4007619 for ; Wed, 7 Apr 2004 20:30:04 -0400 (EDT) Message-ID: <000c01c41d00$a23abb20$0100a8c0@HOME> From: "Q" To: Subject: CCL: calculate accessible surface area for an occluded cavity Date: Wed, 7 Apr 2004 19:29:58 -0500 MIME-Version: 1.0 Content-Type: multipart/alternative; boundary="----=_NextPart_000_0009_01C41CD6.B6A7DD10" X-Priority: 3 X-MSMail-Priority: Normal X-Mailer: Microsoft Outlook Express 6.00.2800.1158 X-MimeOLE: Produced By Microsoft MimeOLE V6.00.2800.1165 X-Virus-Scanned: Symantec AntiVirus Scan Engine This is a multi-part message in MIME format. ------=_NextPart_000_0009_01C41CD6.B6A7DD10 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Dear All, I have a protein with an internal cavity that has no access to the = outside solvent. I would like to calculate the accessible surface area = of the residues inside the cavity to see how accessible they are to the = cavity. How can I do this or what programs could help to do it? How = about NACCESS? Thanks for any input. Qin ------=_NextPart_000_0009_01C41CD6.B6A7DD10 Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

Dear All,

I have a protein with an internal = cavity that=20 has no access to the outside solvent. I would like to calculate the = accessible=20 surface area of the residues inside the cavity to see how accessible = they are to=20 the cavity. How can I do this or what programs could help to do it? How = about=20 NACCESS? Thanks for any input.

Qin

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