R: view CHARMM trajectory



Hi Yu,
 you can try with VEGA http://users.unimi.it/ddl/ or gOpenMol
 http://www.csc.fi/gopenmol/
 Cheers,
 Letizia
 Maria Letizia Barreca, Ph.D.
 Dipartimento Farmaco-Chimico
 Universita'degli Studi di Messina
 Viale Annunziata 98168 MESSINA ITALY
 Phone: +39 090 6766464
 Fax:   +39 090 355613
 email: barrecal.-at-.pharma.unime.it
 -----Messaggio originale-----
 Da: Computational Chemistry List [mailto:chemistry-request.-at-.ccl.net] Per
 conto di Yu Sun (Denis)
 Inviato: mercoledi 12 maggio 2004 23.17
 A: chemistry.-at-.ccl.net
 Oggetto: CCL:view CHARMM trajectory
 Hi, everybody,
 Could someone suggest me  how to view CHARMM trajectory file ? I tried
 to
 use VMD but it failed. I intended to post this message to CHARMM forum
 but
 I cannot  find the "post new message button "  today as before.
 Thanks,
 Yu
 --------------------------------------------------
 Error message from VMD:
 Info) Using plugin psf for structure file C:/Documents and
 Settings/Denis/My Doc
 uments/sim_experiments/12-MAY-04/2ech.psf
 Info) Analyzing structure ...
 Info)    Atoms: 713
 Info)    Residues: 49
 Info)    Waters: 0
 Info)    Segments: 1
 Info)    Fragments: 1   Protein: 1   Nucleic: 0
 ERROR) Error reading optional structure information from coordinate file
 C:/Docu
 ments and Settings/Denis/My
 Documents/sim_experiments/12-MAY-04/2ech_run.cor
 ERROR) Will ignore structure information in this file.
 Info) Using plugin cor for coordinates from file C:/Documents and
 Settings/Denis
 /My Documents/sim_experiments/12-MAY-04/2ech_run.cor
 ERROR) Incorrect number of atoms (0) in
 ERROR) coordinate file C:/Documents and Settings/Denis/My
 Documents/sim_experime
 nts/12-MAY-04/2ech_run.cor
 Info) Finished with coordinate file C:/Documents and Settings/Denis/My
 Documents
 /sim_experiments/12-MAY-04/2ech_run.cor.
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