R: view CHARMM trajectory
- From: "maria letizia barreca"
<barrecal.-at-.pharma.unime.it>
- Subject: R: view CHARMM trajectory
- Date: Thu, 13 May 2004 13:03:43 +0200
Hi Yu,
you can try with VEGA http://users.unimi.it/ddl/ or gOpenMol
http://www.csc.fi/gopenmol/
Cheers,
Letizia
Maria Letizia Barreca, Ph.D.
Dipartimento Farmaco-Chimico
Universita'degli Studi di Messina
Viale Annunziata 98168 MESSINA ITALY
Phone: +39 090 6766464
Fax: +39 090 355613
email: barrecal.-at-.pharma.unime.it
-----Messaggio originale-----
Da: Computational Chemistry List [mailto:chemistry-request.-at-.ccl.net] Per
conto di Yu Sun (Denis)
Inviato: mercoledi 12 maggio 2004 23.17
A: chemistry.-at-.ccl.net
Oggetto: CCL:view CHARMM trajectory
Hi, everybody,
Could someone suggest me how to view CHARMM trajectory file ? I tried
to
use VMD but it failed. I intended to post this message to CHARMM forum
but
I cannot find the "post new message button " today as before.
Thanks,
Yu
--------------------------------------------------
Error message from VMD:
Info) Using plugin psf for structure file C:/Documents and
Settings/Denis/My Doc
uments/sim_experiments/12-MAY-04/2ech.psf
Info) Analyzing structure ...
Info) Atoms: 713
Info) Residues: 49
Info) Waters: 0
Info) Segments: 1
Info) Fragments: 1 Protein: 1 Nucleic: 0
ERROR) Error reading optional structure information from coordinate file
C:/Docu
ments and Settings/Denis/My
Documents/sim_experiments/12-MAY-04/2ech_run.cor
ERROR) Will ignore structure information in this file.
Info) Using plugin cor for coordinates from file C:/Documents and
Settings/Denis
/My Documents/sim_experiments/12-MAY-04/2ech_run.cor
ERROR) Incorrect number of atoms (0) in
ERROR) coordinate file C:/Documents and Settings/Denis/My
Documents/sim_experime
nts/12-MAY-04/2ech_run.cor
Info) Finished with coordinate file C:/Documents and Settings/Denis/My
Documents
/sim_experiments/12-MAY-04/2ech_run.cor.
-= This is automatically added to each message by the mailing script =-
To send e-mail to subscribers of CCL put the string CCL: on your
Subject: line
and send your message to: CHEMISTRY.-at-.ccl.net
Send your subscription/unsubscription requests to:
CHEMISTRY-REQUEST.-at-.ccl.net
HOME Page: http://www.ccl.net
| Jobs Page: http://www.ccl.net/jobs
If your mail is bouncing from CCL.NET domain send it to the maintainer:
Jan Labanowski, jlabanow.-at-.nd.edu (read about it on CCL Home Page)
-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+