Re: CCL:Effect of oxidation on electron density
- From: Mikael Johansson <mpjohans -()- pcu.helsinki.fi>
- Subject: Re: CCL:Effect of oxidation on electron density
- Date: Wed, 20 Apr 2005 14:27:24 +0300 (EEST)
Hello Noel and All!
On Tue, 19 Apr 2005, Noel O'Boyle wrote:
I am using Gaussian03 and have calculated the electron density of the
molecule in its oxidised state (at the geometry of the native state) and
subtracted this from the electron density of the molecule in its native
state.
However, I have just noticed that the total spin density of the oxidised
molecule gives an almost identical picture. Is this true in general? (I
don't have a good understanding of what the total spin density shows.)
No. Spin density and total electron density difference are two
different
and more or less independent creatures, though they _can_ be located to
similar regions of the molecule (as apparently for you). Spin density
is
much more free to change after, for example, oxidation/reduction. The
electron density is much more restricted as it is bound by classical
electrostatic forces.
I've done some studies comparing electron and spin density changes
during
oxidation/reduction of iron porphyrins [1-3]. Perhaps they are of some
interest.
Have a nice day,
Mikael J.
http://www.helsinki.fi/~mpjohans/
[1] M.P. Johansson, M.R.A. Blomberg, D. Sundholm, M. Wikström, "Change
in
electron and spin density upon electron transfer to haem", Biochim.
Biophys. Acta - Bioenergetics 1553 (2002) 183-187.
[2] M.P. Johansson, D. Sundholm, G. Gerfen, M. Wikström, "The Spin
Distribution in Low-Spin Iron Porphyrins", J. Am. Chem. Soc. 124
(2002) 11771-11780
[3] M.P. Johansson, D. Sundholm, "Spin and charge distribution in iron
porphyrin models: A coupled cluster and density-functional study",
J. Chem. Phys. 120 (2004) 3229-3236.