Hi,
Have you tried the command
babel -isdf ligand.sdf -omol new.mol
actually, I am not sure if the "-isdf" or "-omol" is the
right thing but you can check with the list in babel by typing "babel -m". It
should be the abbreviation fir this formate in babel.
regards,
shireen
From: "Senthil Kumar Natesan senthilkumar_natesan()bi.iiita.ac.in" <owner-chemistry _ ccl.net>
Reply-To: "CCL Subscribers" <chemistry _ ccl.net>
To: "Alfalah, Sherin " <shireenfalah _ hotmail.com>
Subject: CCL: conversion of sdf to mol files(multiple)
Date: Fri, 7 Apr 2006 02:07:11 -0400
>Sent to CCL by: "Senthil Kumar Natesan" [senthilkumar_natesan*bi.iiita.ac.in]
>Dear Pals,
>
>I tried with the following command in open babel to convert multiple sdf file into individual new files, but end up with only single mol file.
>
>babel ligand.sdf new.mol -m
>
>Any help in this regard would be appreciated.
>
>sincerely,
>
>senthil kumar Natesan
>
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