CCL:G: ONIOM calculation errors. Help!
- From: "Yuanyuan Cui" <wicky.cc(0)gmail.com>
- Subject: CCL:G: ONIOM calculation errors. Help!
- Date: Tue, 26 Aug 2008 12:50:05 -0400
Sent to CCL by: "Yuanyuan Cui" [wicky.cc*gmail.com]
I'm doing a 2-layer ONIOM calculation. My ligand are two Zinc ions are set to
the high layer (rhf/6-31g*) and 16 residues from the protein active site around
this ligand are set to low layer (i tried amber and am1). I deleted the backbone
of the residues and added H for the valence. But I met several problems with
this setting.
1. I used gaussview3 to prepare the input file for ONIOM. It works ok for the
high layer, but after I set the charge for the low layer to be -2 (two Asp in
the low layer), it can't let me to set the multiplicity to be 1 (it only
provides the options of 2, 4, etc). This happens for both amber and am1. If I
change the multiplicity to be 1 manually in the gaussian input file it
generated, it will complain can't combine multiplicity 1 with 258 electrons.
What could be the problem of this?
2. When I tried to run with multiplicity to be 2 and use am1 for the low layer,
it ran for about one day and got error complaining "unable to achieve
self-consistence". I have used SCF(maxcycle=2000). How can I solve this
problem?
3. When I tried to run low layer using amber, it keeps complaining "Missing
atomic parameters for atom 204". How can I know what parameters it missing
and how can I add those parameters?
I really appreciate your help!
Yuanyuan Cui
wicky.cc|-|gmail.com
Cambridge, MA
USA