From owner-chemistry@ccl.net Thu Apr 1 15:39:00 2010 From: "sandhya sandhya.kortagere-.-gmail.com" To: CCL Subject: CCL: Announce: Several MD / QC codes available for GPUs Message-Id: <-41571-100401105456-19489-SrDqcA0DjTO4zHRbnOO8ag:-:server.ccl.net> X-Original-From: sandhya Content-Type: multipart/alternative; boundary=000e0cd705acbad2fd04832d9f05 Date: Thu, 1 Apr 2010 10:24:43 -0400 MIME-Version: 1.0 Sent to CCL by: sandhya [sandhya.kortagere,+,gmail.com] --000e0cd705acbad2fd04832d9f05 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Dear Sumit, I have attempted to set up 3D visualization with RHEL 5.1 on Dell 7300 with Zalman 3D monitor (a suggestion from Dell rep). The monitor came with their own customized glasses. The Dell rep suggested nvidia quadro FX 4800 and once i had the system i set up the stereo on the xconfig file. I still can'= t get the stereo to work on linux. Is there any thing else that needs to be set up or is the monitor just not compatible with linux. i read raving reviews about zalman monitors with Windows. I don't think we can get viewsonic monitors anymore (may be on ebay). any thoughts? warm regards, sandhya. On Wed, Mar 31, 2010 at 4:59 PM, Igor Filippov Contr igorf],[helix.nih.gov = < owner-chemistry__ccl.net> wrote: > > Sent to CCL by: "Igor Filippov [Contr]" [igorf(~)helix.nih.gov] > I'm interested in 3D stereo as well. > Could you tell us (off-list or on-list) what monitors/glasses > nvidia recommends for 3d stereo? > > Igor > > On Wed, 2010-03-31 at 12:51 -0400, Sumit Gupta sugupta_._nvidia.com > wrote: > > Sent to CCL by: Sumit Gupta [sugupta .. nvidia.com] > > Linux drivers for 3D Vision are already available: > > http://www.nvidia.com/object/linux_display_amd64_195.36.15.html > > > > You will need a GPU board with the stereo connector and we currently on= ly > support the Samsung and Viewsonic panels. > > > > Since this topic is of limited interest to the rest of the CCL communit= y, > > can you please send me a note to my nvidia email address. > > > > Sumit > > > > -----Original Message----- > > > From: owner-chemistry+sugupta=3D=3Dnvidia.com.:.ccl.net [mailto: > owner-chemistry+sugupta =3D=3Dnvidia.com.:.ccl= .net] > On Behalf Of Vincent Leroux vincent.leroux_+_loria.fr > > Sent: Tuesday, March 30, 2010 15:25 > > To: Sumit Gupta > > Subject: CCL: Announce: Several MD / QC codes available for GPUs > > > > > > Sent to CCL by: Vincent Leroux [vincent.leroux||loria.fr] > > Hi, > > > > I have one question. > > > > When will the 3D vision drivers be available under Linux? > > > > Thanks in advance > > VL > > > > > > > > Le 30/03/10 19:57, Sumit Gupta sugupta^-^nvidia.com a =E9crit : > > > Sent to CCL by: "Sumit Gupta" [sugupta/a\nvidia.com] > > > Dear CCL community, > > > > > > We are happy to announce that several molecular dynamics and quantum > chemistry software are now available on GPUs. These are listed at: > > > http://www.nvidia.com/object/tesla_bio_workbench.html > > > > > > The software includes AMBER, ABINIT (based on BigDFT), ACEMD, GROMACS= , > GROMOS, > > > HOOMD, LAMMPS, NAMD, TeraChem, VMD. For docking, the HEX > protein-protein > > > docking software is available too. > > > > > > Some of these like ABINIT, GROMOS, and HEX are still not linked from > the link > > > above but can be found at: > > > ABINIT http://www.abinit.org/ uses BigDFT > http://inac.cea.fr/L_Sim/BigDFT/ > > > GROMOS http://code.google.com/p/gpugromos/ > > > HEX http://www.loria.fr/~ritchied/hex/ > > > > > > Please feel free to contact me if you have questions. > > > > > > Regards > > > Sumit > > > sumitg AT nvidia > com----------------------------------------------------------------------= ------------- > > This email message is for the sole use of the intended recipient(s) and > may contain > > confidential information. Any unauthorized review, use, disclosure or > distribution > > is prohibited. If you are not the intended recipient, please contact t= he > sender by > > reply email and destroy all copies of the original message. > > > -------------------------------------------------------------------------= ---------- > > > > > > > > -=3Dis is automatically added to each message by the mailing script =3D= > > > > > > > -=3D This is automatically added to each message by the mailing script = =3D-> > > --=20 warm regards, sandhya. --000e0cd705acbad2fd04832d9f05 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Dear Sumit,

I have attempted to set up 3D visualization with RHEL 5.= 1 on Dell 7300 with Zalman 3D monitor (a suggestion from Dell rep). The mon= itor came with their own customized glasses. The Dell rep suggested nvidia = quadro FX 4800 and once i had the system i set up the stereo on the xconfig= file. I still can't get the stereo to work on linux. Is there any thin= g else that needs to be set up or is the monitor just not compatible with l= inux. i read raving reviews about zalman monitors with Windows. I don't= think we can get viewsonic monitors anymore (may be on ebay). any thoughts= ?

warm regards,
sandhya.


On Wed,= Mar 31, 2010 at 4:59 PM, Igor Filippov Contr igorf],[helix.nih.gov <owner-chemistry__ccl= .net> wrote:

Sent to CCL by: "Igor Filippov [Contr]" [igorf(~)helix.nih.gov]
I'm interested in 3D stereo as well.
Could you tell us (off-list or on-list) what monitors/glasses
nvidia recommends for 3d stereo?

Igor

On Wed, 2010-03-31 at 12:51 -0400, Sumit Gupta sugupta_._nvidia.com
wrote:
> Sent to CCL by: Sumit Gupta [sugupta .. nvidia.com]
> Linux drivers for 3D Vision are already available:
> http://www.nvidia.com/object/linux_display_amd64_19= 5.36.15.html
>
> You will need a GPU board with the stereo connector and we currently o= nly support the Samsung and Viewsonic panels.
>
> Since this topic is of limited interest to the rest of the CCL communi= ty,
> can you please send me a note to my nvidia email address.
>
> Sumit
>
> -----Original Message-----
> > From: owner-chemistry+sugupta=3D=3Dnvidia.com.:.ccl.net [mailto:owner-chemistry+sugupta=3D=3Dnvidia= .com.:.ccl.net] On Behalf = Of Vincent Leroux vincent.leroux_+_loria.fr
> Sent: Tuesday, March 30, 2010 15:25
> To: Sumit Gupta
> Subject: CCL: Announce: Several MD / QC codes available for GPUs
>
>
> Sent to CCL by: Vincent Leroux [vincent.ler= oux||loria.fr]
> Hi,
>
> I have one question.
>
> When will the 3D vision drivers be available under Linux?
>
> Thanks in advance
> VL
>
>
>
> Le 30/03/10 19:57, Sumit Gupta sugupta^-^nvidia.com a =E9crit :
> > Sent to CCL by: "Sumit =A0Gupta" [sugupta/a\nvidia.com]
> > Dear CCL community,
> >
> > We are happy to announce that several molecular dynamics and quan= tum chemistry software are now available on GPUs. =A0 These are listed at:<= br> > > http://www.nvidia.com/object/tesla_bio_workbench.html
> >
> > The software includes AMBER, ABINIT (based on BigDFT), ACEMD, GRO= MACS, GROMOS,
> > HOOMD, LAMMPS, NAMD, TeraChem, VMD. =A0 For docking, the HEX prot= ein-protein
> > docking software is available too.
> >
> > Some of these like ABINIT, GROMOS, and HEX are still not linked f= rom the link
> > above but can be found at:
> > ABINIT http:= //www.abinit.org/ =A0uses BigDFT http://inac.cea.fr/L_Sim/BigDFT/
> > GROMOS http://code.google.com/p/gpugromos/
> > HEX http://www.loria.fr/~ritchied/hex/
> >
> > Please feel free to contact me if you have questions.
> >
> > Regards
> > Sumit
> > sumitg AT nvidia com---------------------------------------------= --------------------------------------
> This email message is for the sole use of the intende= d recipient(s) and may contain
> confidential information. =A0Any unauthorized review, use, disclosure = or distribution
> is prohibited. =A0If you are not the intended recipient, please contac= t the sender by
> reply email and destroy all copies of the original message.
> ----------------------------------------------------------------------= -------------
>
>
>
> -=3Dis is automatically added to each message by the mailin= g script =3D>
>



-=3D This is automatically added to each message by the mailing scrip= t =3D-



--
warm regard= s,
sandhya.
--000e0cd705acbad2fd04832d9f05--