From owner-chemistry@ccl.net Fri Apr 2 15:06:00 2010 From: "maxim totrov max#%#molsoft.com" To: CCL Subject: CCL: Announce: Several MD / QC codes available for GPUs Message-Id: <-41581-100402142245-28119-Izd4amwwRwsDcAZNjg84uQ]^[server.ccl.net> X-Original-From: maxim totrov Content-Type: multipart/alternative; boundary=Apple-Mail-41--134915539 Date: Fri, 2 Apr 2010 10:41:00 -0700 Mime-Version: 1.0 (Apple Message framework v935.3) Sent to CCL by: maxim totrov [max ~~ molsoft.com] --Apple-Mail-41--134915539 Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes Content-Transfer-Encoding: quoted-printable I have a Zalman and it works quite well in a simple line-interleaved =20 mode (even/odd lines for left/right images). I don't know if it =20 supports full resolution quad-buffered stereo. Best wishes, Max Totrov > Dear Sumit, > > I have attempted to set up 3D visualization with RHEL 5.1 on Dell =20 > 7300 with Zalman 3D monitor (a suggestion from Dell rep). The =20 > monitor came with their own customized glasses. The Dell rep =20 > suggested nvidia quadro FX 4800 and once i had the system i set up =20 > the stereo on the xconfig file. I still can't get the stereo to work =20= > on linux. Is there any thing else that needs to be set up or is the =20= > monitor just not compatible with linux. i read raving reviews about =20= > zalman monitors with Windows. I don't think we can get viewsonic =20 > monitors anymore (may be on ebay). any thoughts? > > warm regards, > sandhya. > > > On Wed, Mar 31, 2010 at 4:59 PM, Igor Filippov Contr igorf],=20 > [helix.nih.gov wrote: > > Sent to CCL by: "Igor Filippov [Contr]" [igorf(~)helix.nih.gov] > I'm interested in 3D stereo as well. > Could you tell us (off-list or on-list) what monitors/glasses > nvidia recommends for 3d stereo? > > Igor > > On Wed, 2010-03-31 at 12:51 -0400, Sumit Gupta sugupta_._nvidia.com > wrote: > > Sent to CCL by: Sumit Gupta [sugupta .. nvidia.com] > > Linux drivers for 3D Vision are already available: > > http://www.nvidia.com/object/linux_display_amd64_195.36.15.html > > > > You will need a GPU board with the stereo connector and we =20 > currently only support the Samsung and Viewsonic panels. > > > > Since this topic is of limited interest to the rest of the CCL =20 > community, > > can you please send me a note to my nvidia email address. > > > > Sumit > > > > -----Original Message----- > > > From: owner-chemistry+sugupta=3D=3Dnvidia.com.:.ccl.net = [mailto:owner-chemistry+sugupta=3D=3Dnvidia.com.:.ccl.net=20 > ] On Behalf Of Vincent Leroux vincent.leroux_+_loria.fr > > Sent: Tuesday, March 30, 2010 15:25 > > To: Sumit Gupta > > Subject: CCL: Announce: Several MD / QC codes available for GPUs > > > > > > Sent to CCL by: Vincent Leroux [vincent.leroux||loria.fr] > > Hi, > > > > I have one question. > > > > When will the 3D vision drivers be available under Linux? > > > > Thanks in advance > > VL > > > > > > > > Le 30/03/10 19:57, Sumit Gupta sugupta^-^nvidia.com a =E9crit : > > > Sent to CCL by: "Sumit Gupta" [sugupta/a\nvidia.com] > > > Dear CCL community, > > > > > > We are happy to announce that several molecular dynamics and =20 > quantum chemistry software are now available on GPUs. These are =20 > listed at: > > > http://www.nvidia.com/object/tesla_bio_workbench.html > > > > > > The software includes AMBER, ABINIT (based on BigDFT), ACEMD, =20 > GROMACS, GROMOS, > > > HOOMD, LAMMPS, NAMD, TeraChem, VMD. For docking, the HEX =20 > protein-protein > > > docking software is available too. > > > > > > Some of these like ABINIT, GROMOS, and HEX are still not linked =20= > from the link > > > above but can be found at: > > > ABINIT http://www.abinit.org/ uses BigDFT = http://inac.cea.fr/L_Sim/BigDFT/ > > > GROMOS http://code.google.com/p/gpugromos/ > > > HEX http://www.loria.fr/~ritchied/hex/ > > > > > > Please feel free to contact me if you have questions. > > > > > > Regards > > > Sumit > > > sumitg AT nvidia =20 > com=20 > = --------------------------------------------------------------------------= --------- > > This email message is for the sole use of the intended =20 > recipient(s) and may contain > > confidential information. Any unauthorized review, use, =20 > disclosure or distribution > > is prohibited. If you are not the intended recipient, please =20 > contact the sender by > > reply email and destroy all copies of the original message. > > =20 > = --------------------------------------------------------------------------= --------- > > > > > > > > -=3Dis is automatically added to each message by the mailing script = =3D> > > > > > > -=3D This is automatically added to each message by the mailing script = =20 > =3D- > To recover the email address of the author of the message, please =20 > change > > > > E-mail to subscribers: CHEMISTRY ~ ccl.net or use:> > E-mail to administrators: CHEMISTRY-REQUEST ~ ccl.net or use> Conferences: http://server.ccl.net/chemistry/announcements/=20 > conferences/> > > > > > --=20 > warm regards, > sandhya. --Apple-Mail-41--134915539 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable I have a Zalman and it works = quite well in a simple line-interleaved mode (even/odd lines for = left/right images). I don't know if it supports full resolution = quad-buffered stereo.

Best wishes,
Max = Totrov


Dear = Sumit,

I have attempted to set up 3D visualization with RHEL 5.1 = on Dell 7300 with Zalman 3D monitor (a suggestion from Dell rep). The = monitor came with their own customized glasses. The Dell rep suggested = nvidia quadro FX 4800 and once i had the system i set up the stereo on = the xconfig file. I still can't get the stereo to work on linux. Is = there any thing else that needs to be set up or is the monitor just not = compatible with linux. i read raving reviews about zalman monitors with = Windows. I don't think we can get viewsonic monitors anymore (may be on = ebay). any thoughts?

warm regards,
sandhya.


On Wed, Mar 31, 2010 at 4:59 PM, Igor Filippov = Contr igorf],[helix.nih.gov <owner-chemistry ~ ccl.net> wrote:
=

Sent = to CCL by: "Igor Filippov [Contr]" [igorf(~)helix.nih.gov]
= I'm interested in 3D stereo as well.
Could you tell us (off-list or = on-list) what monitors/glasses
nvidia recommends for 3d stereo?
=
Igor

On Wed, 2010-03-31 at 12:51 -0400, Sumit Gupta = sugupta_._nvidia.com
wrote:
> Sent to CCL = by: Sumit Gupta [sugupta .. nvidia.com]
> Linux drivers for = 3D Vision are already available:
> http://www.nvidia.com/object/linux_display_amd64_195.36.= 15.html
>
> You will need a GPU board with the stereo = connector and we currently only support the Samsung and Viewsonic = panels.
>
> Since this topic is of limited interest to the = rest of the CCL community,
> can you please send me a note to my = nvidia email address.
>
> Sumit
>
=
> -----Original Message-----
> > From: = owner-chemistry+sugupta=3D=3Dnvidia.com.:.ccl.net [mailto:owner-chemistry+sugupta=3D=3Dnvidia.com.:.ccl.net] On Behalf Of = Vincent Leroux vincent.leroux_+_loria.fr
> Sent: Tuesday, March 30, 2010 = 15:25
> To: Sumit Gupta
> Subject: CCL: = Announce: Several MD / QC codes available for GPUs
>
>
=
> Sent to CCL by: Vincent Leroux = [vincent.leroux||loria.fr]
> Hi,
>
> I have = one question.
>
> When will the 3D vision drivers be = available under Linux?
>
> Thanks in advance
> = VL
>
>
>
> Le 30/03/10 19:57, Sumit Gupta = sugupta^-^nvidia.com = a =E9crit :
> > Sent to CCL by: "Sumit  Gupta" = [sugupta/a\nvidia.com]
> > Dear CCL community,
= > >
> > We are happy to announce that several molecular = dynamics and quantum chemistry software are now available on GPUs. =   These are listed at:
> > http://www.nvidia.com/object/tesla_bio_workbench.html
> >
> > The software includes AMBER, ABINIT (based = on BigDFT), ACEMD, GROMACS, GROMOS,
> > HOOMD, LAMMPS, NAMD, = TeraChem, VMD.   For docking, the HEX protein-protein
> > = docking software is available too.
> >
> > Some of = these like ABINIT, GROMOS, and HEX are still not linked from the = link
> > above but can be found at:
> > ABINIT
http://www.abinit.org/  uses BigDFT http://inac.cea.fr/L_Sim/BigDFT/
> > = GROMOS http://code.google.com/p/gpugromos/
> > = HEX http://www.loria.fr/~ritchied/hex/
> = >
> > Please feel free to contact me if you have = questions.
> >
> > Regards
> > Sumit
= > > sumitg AT nvidia = com-----------------------------------------------------------------------= ------------
> This email message is for the = sole use of the intended recipient(s) and may contain
> = confidential information.  Any unauthorized review, use, disclosure = or distribution
> is prohibited.  If you are not the = intended recipient, please contact the sender by
> reply email = and destroy all copies of the original message.
> = --------------------------------------------------------------------------= ---------
>
>
>
> -=3Dis is = automatically added to each message by the mailing script =3D>
= >



-=3D This is automatically added to each = message by the mailing script =3D-
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warm regards,
sandhya.

= --Apple-Mail-41--134915539--