CCL: Creating "cartoony" molecular images
- From: Emilio Gallicchio <emilio]_[biomaps.rutgers.edu>
- Subject: CCL: Creating "cartoony" molecular images
- Date: Wed, 15 Feb 2012 10:08:03 -0500
Sent to CCL by: Emilio Gallicchio [emilio-#-biomaps.rutgers.edu]
Molscript (http://www.avatar.se/molscript/index.html) by Per Kraulis
used to be very popular for creating molecular cartoons. Some sample
illustrations from our own work can be seen in this paper (and many
others): http://dx.doi.org/10.1016/j.jmb.2005.08.009
Molscript is a powerful tool, but it's unclear to me whether it
remains in current use and it is being actively maintained. Maybe Per
Kraulis would be willing to comment?
Emilio
--
Dr. Emilio Gallicchio
Director of High Performance Computing
BioMaPS Institute - Rutgers University
Wright-Rieman Laboratories Room 205
610 Taylor Rd.
Piscataway, NJ 08854-8087
Email: emilio : biomaps.rutgers.edu
WWW: http://hpcp.rutgers.edu/~emilio
Phone: 732-445-5157 Fax: 732-445-5958
On Tue, Feb 14, 2012 at 6:58 PM, Billy McCann bwm0005()
tigermail.auburn.edu <owner-chemistry : ccl.net> wrote:
>
> Sent to CCL by: Billy McCann [bwm0005 * tigermail.auburn.edu]
> Greetings All.
>
> I'm attempting to create molecular images which are very
"cartoony" in nature, i.e. no lighting or shine on the atoms, bonds
represented as thick black lines, etc.
>
> For example, see the following image linked below:
> http://www.auburn.edu/~bwm0005/sample2.jpg
>
> The software which was previously used is designed for an outdated platform
(classic Mac) and so I'm searching for a replacement. I've tried many of
the popular molecular imaging programs, but most create plastic and/or metallic
looking images even after tweaking the settings.
>
> The product with which I've come closest is Chemcraft. I adjusted the
configuration of the trial-ware version to produce the following image, which is
very close to my goal:
> http://www.auburn.edu/~bwm0005/sample.jpg
>
> However, price may be an issue.
>
> Any suggestions for a less expensive or free alternative which you think
will suite my purposes would be greatly appreciated.
>
>
> Sincerely,
>
> Billy
>
>
> +++++++++++++++++++
> Billy Wayne McCann
> Acevedo Research
> Auburn University, Alabama
> Office # = 334-844-6948
> +++++++++++++++++++> http://www.ccl.net/cgi-bin/ccl/send_ccl_message>
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