CCL: Highlighting some part of a molecule

From: Andrew Yeung <andrew.yeung:+:chem.tamu.edu>
Subject: CCL: Highlighting some part of a molecule
Date: Mon, 23 Jul 2012 13:03:10 -0500

 Sent to CCL by: Andrew Yeung [andrew.yeung[-]chem.tamu.edu]

You can export the structure as cartesian coordinates (XYZ), andmanipulate it with your favorite 3D program like Mercury or Avogadro.

 If you want nice pictures, you can re-export to POV-Ray and render them.
 Andrew Yeung
 Donald J. Darensbourg Research Group
 Department of Chemistry, Texas A&M University
 3255 TAMU
 College Station, TX 77843-3255
 Tel: 979 845 4837
 On 2012-07-21 12:56 AM, M Shabbir shabbir193rb-$-gmail.com wrote:

 Sent to CCL by: "M  Shabbir" [shabbir193rb!=!gmail.com]
 Dear Dr.McCann,
 Thanks for ur comments. Although by selecting from atomic list some atoms become
 highlighted BUT
 my aim is to change their color or just highlight these in this way without any
 numbering as shown on
 atoms by default...
 Dr.Shabbir
 Osaka University,Japan

 "Billy McCann bwm0005]*[tigermail.auburn.edu"  wrote:
 Sent to CCL by: Billy McCann [bwm0005]-[tigermail.auburn.edu]
 Hello Dr. Shabbir,
 In Gaussview, you can select Edit > Atom list.  From there, you'll get the
 atom list for which there is

 a "highlight" column.  Just select the atom(s) you'd like to highlight
 and click on the corresponding cell.
 I don't think that the highlight color is configurable.  I'm using GaussView5
 for Windows.

 Hope that helps.
 +++++++++++++++++++++++++
 Billy Wayne McCann
 Ph.D. Candidate
 Orlando Acevedo Reseach
 Auburn University, Alabama
 Office # = 334.844.6948
 bwayne on irc.freenode.net
 +++++++++++++++++++++++++
 -----Original Message-----

 From: owner-chemistry+bwm0005==auburn.edu*ccl.net [mailto:owner-

 chemistry+bwm0005==auburn.edu*ccl.net] On Behalf Of M Shabbir
 shabbir193rb{:}gmail.com

 Sent: Friday, July 20, 2012 9:26 AM
 To: Billy McCann
 Subject: CCL: Highlighting some part of a molecule
 Sent to CCL by: "M  Shabbir" [shabbir193rb~~gmail.com] Dear CCL
 colleagues,
 How is it possible by using (GuessView or Macmolepro etc.) to highlight some
 specific atoms in a

 molecule?

 Thanks in advance!
 regards,
 Dr.Shabbirhttp://www.ccl.net/cgi-

 bin/ccl/send_ccl_messagehttp://www.ccl.net/chemistry/sub_unsub.shtmlhttp-:-//www.ccl.net/spammer
 s.txt>