From owner-chemistry@ccl.net Mon Oct 22 19:43:00 2012 From: "Amy Austin amy_jean_austin---yahoo.com" To: CCL Subject: CCL:G: Restart CCSD jobs Message-Id: <-47790-121022175658-25198-brFwDM2sEJoBrV+3VzjTiA{:}server.ccl.net> X-Original-From: Amy Austin Content-Type: multipart/alternative; boundary="-244526598-895988976-1350943010=:67412" Date: Mon, 22 Oct 2012 14:56:50 -0700 (PDT) MIME-Version: 1.0 Sent to CCL by: Amy Austin [amy_jean_austin . yahoo.com] ---244526598-895988976-1350943010=:67412 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable Hi Roger,=0A=0AThe checkpoint files needed for reoptimization are hardware = specific. The best thing to do is to convert to .chk (which is a binary fil= e) to .fchk (asci file) using the formcheck utility.=0A=0Ae.g. =0A=0A$ form= chk example.chk example.fchk=0A=0Ahttp://www.gaussian.com/g_tech/g_ur/u_for= mchk.htm=0A=0AKind regards,=0A=0AAmy=0A=0A=0A=0A=0A=0A_____________________= ___________=0A From: Roger Robinson r.robinson*o*imperial.ac.uk =0ATo: "Austin, Amy J " = =0ASent: Monday, October 22, 2012 11:08 AM=0ASubject: CCL: Restart CCSD job= s=0A =0A=0ASent to CCL by: Roger Robinson [r.robinson : imperial.ac.uk]=0AH= i,=0A=0AI need to restart some CCSD jobs as the machine they are on are bei= ng decommissioned.=0A=0AThe jobs have produced some very large rwf ie betwe= en 100GB and 270GB.=0A=0AI have copied the rwf files back from local sites = to the network device.=0A=0AI notice the RWF havent been rewritten to for s= everal days.=0A=0AThey have all got to the part of the job after the conver= gence iterations ie all say something like this.=0A=0AIteration Nr.=A0 14= =0A**********************=0ADD1Dir will call FoFDir=A0 1 times, MxPair=3D= =A0 =A0 =A0 600=0ANAB=3D=A0 300 NAA=3D=A0 =A0 0 NBB=3D=A0 =A0 0 NumPrc= =3D 16.=0ADE(Corr)=3D=A0 -1.5338361=A0 =A0 E(CORR)=3D=A0 =A0 -349.4599057= 4 Delta=3D-1.89D-08=0ANORM(A)=3D=A0 0.12459143D+01=0ALargest amplitude=3D = 3.48D-02=0A=0AThe scratch files have also stopped growing.=0A=0AIs there st= ill alot of input and output to the scratch files anymore after this point = ?=0A=0AWould it be possible to carry out the jobs with the scratch file on = the network drive at this point ?=A0 I should I move then to new local file= systems ?=0A=0AAs a test I restarted one job with the restart file on the = network file system. The job seems to be running ok and more importantly is= using 100% of the CPU allocated which could suggest its not struggling for= I/O throughtput ?=0A=0AThanks Roger=0A=0A=0A=0A-=3D This is automatically = added to each message by the mailing script =3D-=0ATo recover the email add= ress of the author of the message, please change=0Athe strange characters o= n the top line to the ^_^ sign. You can also=0Alook up the X-Original-From: l= ine in the mail header.=0A=0AE-mail to subscribers: CHEMISTRY^_^ccl.net or us= e:=0A=A0 =A0=0A=0AE-mail t= o administrators: CHEMISTRY-REQUEST^_^ccl.net or use=0A=A0 =A0 http://www.ccl= .net/cgi-bin/ccl/send_ccl_message=0A=0ASubscribe/Unsubscribe:=A0 =A0 =A0 ht= tp://www.ccl.net/chemistry/sub_unsub.shtml=0A=0ABefore posting, check wait = time at: http://www.ccl.net=0A=0AConferences: = http://server.ccl.net/chemistry/announcements/conferences/=0A=0ASearch Mess= ages: http://www.ccl.net/chemistry/searchccl/index.shtml=0A=0AIf your mail = bounces from CCL with 5.7.1 error, check:=0A=A0 =A0 http://www.ccl.net/spa= mmers.txt=0A=0A---244526598-895988976-1350943010=:67412 Content-Type: text/html; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable
Hi Roger,

The = checkpoint files needed for reoptimization are hardware specific. The best = thing to do is to convert to .chk (which is a binary file) to .fchk (asci f= ile) using the formcheck utility.

e.g.
$ formchk exa=
mple.chk example.fchk

http://www.gaussian.com/g_tech/g_ur/u_f= ormchk.htm

Kind regards,

Amy

<= /span>


From: Roger Robinson r.robinson*= o*imperial.ac.uk <owner-chemistry^_^ccl.net>
To: "Austin, Amy J " <amy_jean_austin^_^yahoo.c= om>
Sent: Monday, = October 22, 2012 11:08 AM
Subject= : CCL: Restart CCSD jobs

=0A
Sent to C= CL by: Roger Robinson [r.robinson : imperial.ac.uk]
Hi,

I need to restart some CCSD= jobs as the machine they are on are being decommissioned.

The jobs = have produced some very large rwf ie between 100GB and 270GB.

I have= copied the rwf files back from local sites to the network device.

I= notice the RWF havent been rewritten to for several days.

They have= all got to the part of the job after the convergence iterations ie all say= something like this.

Iteration Nr.  14
******************= ****
DD1Dir will call FoFDir  1 times, MxPair=3D    &nb= sp; 600
NAB=3D  300 NAA=3D    0 NBB=3D    = 0 NumPrc=3D 16.
DE(Corr)=3D  -1.5338361    E(CORR)=3D&n= bsp;   -349.45990574 Delta=3D-1.89D-08
NORM(A)=3D  0.124591= 43D+01
Largest amplitude=3D 3.48D-02

The scratch files have also stopped growing.

Is there still alot of input and output to the scr= atch files anymore after this point ?

Would it be possible to carry = out the jobs with the scratch file on the network drive at this point ?&nbs= p; I should I move then to new local file systems ?

As a test I rest= arted one job with the restart file on the network file system. The job see= ms to be running ok and more importantly is using 100% of the CPU allocated= which could suggest its not struggling for I/O throughtput ?

Thanks= Roger



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