From owner-chemistry@ccl.net Thu Mar 19 05:29:01 2015 From: "Cina Foroutan-Nejad canyslopus]~[yahoo.co.uk" To: CCL Subject: CCL: looking for a parameter to characterize the degree of delocalization Message-Id: <-51154-150319052619-4329-k/qoHMUWpz4ZfeJ2P4dgJw-$-server.ccl.net> X-Original-From: Cina Foroutan-Nejad Content-Type: multipart/alternative; boundary="----=_Part_397949_1795092889.1426757168595" Date: Thu, 19 Mar 2015 09:26:08 +0000 (UTC) MIME-Version: 1.0 Sent to CCL by: Cina Foroutan-Nejad [canyslopus++yahoo.co.uk] ------=_Part_397949_1795092889.1426757168595 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Dear Youhao, There is a straighforward parameter defined within the context of QTAIM (qu= antum theory of atoms in molecules). It is called delocalization index. It = measures the degree of electron sharing between two topological atoms. Many= QTAIM programs can define delocalization index between atomic pairs but us= ually they do not partition it into orbital contributions. However, if you = want you can partition DI into orbital contributions by having overlap matr= ix for each atom. Among AIM programs AIM2000 provides overlap matrix for at= oms. I am not sure if Multiwfn can do it or not but you may ask its develop= er. Once you have overlap matrix for any atom, you can measure orbital cont= ributions via a simple equation: DI(A,B) =3D - Sigma Sigma [Sij(A)Sij(B)] Where A and B are two atoms, by Sigma as you may guess I mean summation, an= d Sij(a and B) are overlap terms for each orbital. Please be careful that i= f you merely focus on pi-orbitals then a part of DI which is related to par= tial overlap between pi and sigma or delta... will be missing. For an ideal= ly symmetric system this must be zero but this is not necessarily true for = all systems. So, for non-planar/non-symmetric systems you may sum up contri= butions of pi, sigma, etc. together then compare it with total DI to have t= he contribution of mixing too. This type of computation is NOT conventional= or straightforward and I cannot refer you to a particular paper but theore= tically is possible. For more information regarding DI you may look at J. P= hys. Chem. A, 1999, 103, 304-314. On the other hand, some researchers believe that measuring current density = in the presence of magnetic fields is also a measure of pi-delocalization. = You may check some papers with the keyword current density but be aware tha= t there is a fundamental difference between DI and current density. DI is a= ground-state property but current density that is widely believed is a mea= sure of pi electron delocalization is a "response" property. This means tha= t DI is non-zero in the absence of external fields but current density is z= ero in the absence of an external magnetic field.=C2=A0 Good luck,Cina -------------------------------------------------------------------------Ci= na Foroutan-Nejad, PhD,CEITEC-Central European Institute of TechnologyMasar= yk University, Brno,Czech Republichttps://muni.academia.edu/CinaForoutanNej= ad =20 On Thursday, 19 March 2015, 3:28, Youzhao Lan lyzhao(_)aliyun.com wrote: =20 =20 Sent to CCL by: "Youzhao=C2=A0 Lan" [lyzhao]_[aliyun.com] Dear all, Is there a calculated parameter or quantity to characterize the degree of delocalization of pi-electron? Any help will be appreciated. Best regards. Youzhao Lan -=3D This is automatically added to each message by the mailing script =3D-=C2=A0 =C2=A0 =C2=A0=C2=A0 =C2=A0 =C2=A0Subscribe/Unsubscribe:=20 =C2=A0 =C2=A0 =C2=A0Job: http://www.ccl.net/jobs=20=C2=A0 =C2=A0 =C2=A0------=_Part_397949_1795092889.1426757168595 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Dear Youhao,

There is a straighforward parameter defined within the = context of QTAIM (quantum theory of atoms in molecules). It is called deloc= alization index. It measures the degree of electron sharing between two top= ological atoms. Many QTAIM programs can define delocalization index between= atomic pairs but usually they do not partition it into orbital contributio= ns. However, if you want you can partition DI into orbital contributions by= having overlap matrix for each atom. Among AIM programs AIM2000 provides o= verlap matrix for atoms. I am not sure if Multiwfn can do it or not but you= may ask its developer. Once you have overlap matrix for any atom, you can = measure orbital contributions via a simple equation:

DI(A,B) =3D - Sigma Sigma [Sij(A)Sij(B)]
=

Where A and B are two atoms, by Sigma as you = may guess I mean summation, and Sij(a and B) are overlap terms for each orb= ital. Please be careful that if you merely focus on pi-orbitals then a part= of DI which is related to partial overlap between pi and sigma or delta...= will be missing. For an ideally symmetric system this must be zero but thi= s is not necessarily true for all systems. So, for non-planar/non-symmetric= systems you may sum up contributions of pi, sigma, etc. together then comp= are it with total DI to have the contribution of mixing too. This type of c= omputation is NOT conventional or straightforward and I cannot refer you to= a particular paper but theoretically is possible. For more information reg= arding DI you may look at J. Phys. Chem. A, 1999, 103, 304-314.

<= /div>
On the other hand, some researchers believe= that measuring current density in the presence of magnetic fields is also = a measure of pi-delocalization. You may check some papers with the keyword = current density but be aware that there is a fundamental difference between= DI and current density. DI is a ground-state property but current density = that is widely believed is a measure of pi electron delocalization is a "re= sponse" property. This means that DI is non-zero in the absence of external= fields but current density is zero in the absence of an external magnetic = field. 

Good luck,
Cina

-= ------------------------------------------------------------------------
Cina Foroutan-Nejad, PhD,
CEITEC-Central European Institute of Technology=
Masaryk University, Brno,
Czech Repu= blic




On Thursday, 19 March 2015, 3:28, Y= ouzhao Lan lyzhao(_)aliyun.com <owner-chemistry.-$-.ccl.net> wrote:
<= /font>



Sent to CCL by: = "Youzhao  Lan" [lyzhao]_[aliyun.com]
Dear all,
Is there a calcul= ated parameter or quantity to characterize
the degree of delocalization = of pi-electron?

Any help will be appreciated.

Best regards.Youzhao Lan



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