CCL: NPT vs. NVT, considerations for crystal simulations and nucleation
- From: "conor d parks"
<coparks2012%a%gmail.com>
- Subject: CCL: NPT vs. NVT, considerations for crystal simulations
and nucleation
- Date: Fri, 21 Aug 2015 17:11:43 -0400
Sent to CCL by: "conor d parks" [coparks2012{}gmail.com]
Hello everyone,
I was wondering if someone could potentially help me work through a very
conceptual problem. I
recently was trying to run nucleation simulations of water at 1.00 g/cm^3 217 K
in the NVT
ensemble. However, I wasn't seeing the types of cluster size fluctuations (I.E.
any) I was
expecting, and started to wonder if it was due to my use of the NVT ensemble.
Now firstly, this
isn't due to finite size effects I believe, because the simulation was ran with
2000 water
molecules.
My issue with water above made me start to think about how I wanted to handle my
glycine
simulations as well. I am interested in running glycine in water nucleation
simulations. For
instance, I know glycine's solubility is .338 g/ml at 324 K. So I was going to
make my initial box
size based off the 0.338 g/ml, equilibrate a fluid at 354 K, and then crash to
270 K. Now I can't
seem to figure out if I should run this simulation in NPT or NVT. The solubility
data is gathered
experimentally at 1 atm, obviously. So if I run NVT, my pressure average will
almost assuredly not
be 1 atm. However, if I run NPT and fix the pressure at 1 atm, I don't see why I
should be
guaranteed to fluctuate around the correct solubility. If I think to my
undergrad thermo, in the NPT
ensemble with a constant number of glycine and water molecules (hence mol
fraction is
determined), there should be only one equilibrium concentration. I don't see why
this equilibrium
concentration hopefully generated from an NPT equilibration would correspond to
my solubility
point.
Sorry if that didn't make sense.
Conor