CCL: Adding many explicit water molecules to the model



 Sent to CCL by: Christoph Riplinger [riplinger]*[faccts.de]
 Dear Grigoriy,
 
a recent example can be found here: https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.1c00582
 
There you find a comparison of different approaches to compute EPR properties of a pH-sensitive spin probe, including explicit solvent (which was crucial): using snapshots from an MD, QM/MM, CCSD, EC-RISM, and CPCM.
 Best,
 Christoph
 On 12/19/22 10:15, Grigoriy Zhurko reg_zhurko_-_chemcraftprog.com wrote:
 
 I need to compute the pKa values of some carbon acids and phenols, and it is a
 common practice to add 1-3 explicit water molecules, bonded with polar groups of
 the studied molecule, to better take into account the specific solvation effects
 (in addition to CPCM model). I tried to add many water molecules (14) for better
 results – see attached picture. The results are interesting. At one side,
 possibly very big error is produced by the existence of many local minimums with
 different numbers of h bonds. How these minimums should be named in paper
 – maybe “conformations”, “configurations”,
 “geometrical configurations”, “local minimums”?
 Then I found, that if the computation of different acids is performed with same
 geometrical configurations of 5 h2o molecules bound to –COOH, and with
 same configurations for neutral molecule and anion, possibly the results are
 quite good (a common correlation can be obtained for carbon acids and phenols).
 So I want to publish these results; but I need to read more works when this
 approach (adding many explicit water molecules) was used. Can you suggest such
 papers?
 By the way, using my program Chemcraft is important for such jobs, because the
 “Structures merger” utility in in allows one to transfer several
 H2O molecules in same configuration from one acid to another.
 Grigoriy Zhurko
 https://chemcraftprog.com
 
 --
 FAccTs GmbH
 Rolandstrasse 67, 50677 Köln
 Amtsgericht Köln HRB 88406
 Geschäftsführer: Dr. Christoph Riplinger
 https://www.faccts.de | https://twitter.com/faccts_orca