CCL: Adding many explicit water molecules to the model
- From: Christoph Riplinger <riplinger()faccts.de>
- Subject: CCL: Adding many explicit water molecules to the
model
- Date: Tue, 20 Dec 2022 22:39:38 +0100
Sent to CCL by: Christoph Riplinger [riplinger]*[faccts.de]
Dear Grigoriy,
a recent example can be found here:
https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.1c00582
There you find a comparison of different approaches to compute EPR
properties of a pH-sensitive spin probe, including explicit solvent
(which was crucial): using snapshots from an MD, QM/MM, CCSD, EC-RISM,
and CPCM.
Best,
Christoph
On 12/19/22 10:15, Grigoriy Zhurko reg_zhurko_-_chemcraftprog.com wrote:
I need to compute the pKa values of some carbon acids and phenols, and it is a
common practice to add 1-3 explicit water molecules, bonded with polar groups of
the studied molecule, to better take into account the specific solvation effects
(in addition to CPCM model). I tried to add many water molecules (14) for better
results – see attached picture. The results are interesting. At one side,
possibly very big error is produced by the existence of many local minimums with
different numbers of h bonds. How these minimums should be named in paper
– maybe “conformations”, “configurations”,
“geometrical configurations”, “local minimums”?
Then I found, that if the computation of different acids is performed with same
geometrical configurations of 5 h2o molecules bound to –COOH, and with
same configurations for neutral molecule and anion, possibly the results are
quite good (a common correlation can be obtained for carbon acids and phenols).
So I want to publish these results; but I need to read more works when this
approach (adding many explicit water molecules) was used. Can you suggest such
papers?
By the way, using my program Chemcraft is important for such jobs, because the
“Structures merger” utility in in allows one to transfer several
H2O molecules in same configuration from one acid to another.
Grigoriy Zhurko
https://chemcraftprog.com
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