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627. mdXvu: X11-Based AMBER Molecular Dynamics
Viewing/Analysis Program
by M. J. Forster, NIBSC, Blanche Lane, South Mimms, Hertfordshire EN6 3QG, England The mdXvu program is an X11-based program for viewing or analyzing the results of an AMBER molecular mechanics/dynamics run. It can easily be modified for use with other systems. This program provides a graphical and interactive tool for looking at molecular structures and properties derived from AMBER MD trajectory files. As this program is written in C and uses the X11/XLIB graphics library, it is network transparent and can run on a remote machine while displaying on a local machine. The program is command driven and offers two classes of commands. The general commands allow one to rotate, scale, calculate distances and bond angles. The MD analysis commands load the MD trajectory coordinates and display some parameters derived from them. Lines of Code: 6734 C (SG IRIS/INDIGO, SUN) |