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662. ANUCLYZE: Analyzing Hydrogen Binding
by Henry Gabb, Institut de Biologie et Physico- Chimique, 13 rue Oierre et marie Curie, Paris 75005, France This program was developed to be a fast, simple tool for analyzing Hydrogen bonding and base stacking for nucleic acids. It accepts structures in Brookhaven Protein Databank (PDB) format whose base names obey IUPAC nomenclature. The program analyzes a series of structures representing a simulation trajectory but will also serve for analyzing individual nucleic acid molecules. It searches for hydrogen bonds and base stacking using simple vector analysis with parameters defined by the user. Lines of Code: 927 FORTRAN 77 (IBM RS/6000) |