From: |
peschko #*at*# mermaid.micro.umn.edu (Edward Peschko) |
Date: |
Wed, 16 Feb 94 21:48:25 CST |
Subject: |
Need code for Sim. Annealing algorithm test |
hey all --
I have developed a new variant of simulated annealing, and wanted to test it
out on the protein folding problem. Unfortunately, I know more about programming
sim. annealing than I do programming molecular pot. energy packages.
So:
I was wondering if there was any public domain packages out there that could
do the following (and that I could test my code with):
(And barring public domain, some non-public domain stuff)
1)Figure out a 'good' protein structure based on the bond lengths/angles
inherent in that structure...
2) Figure out the approx potential energy of a given polypeptide chain given
the 3D coordinates of the alpha carbons, or the phi,psi angles -- and possibly
add sidechains as well.
I am aware of CHARMm, GROMOS and Discover, and would also like to get a sense
of their limitations as well as their strengths.
Thanks much,
Ed
(PS: I apologize to all those on the Insight/Discover list for this, which is
a cross-posting)
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