CCL Home Preclinical Pharmacokinetics Service
APREDICA -- Preclinical Service: ADME, Toxicity, Pharmacokinetics
Up Directory CCL October 09, 1999 [001]
Previous Message Month index Next day

From:  "Robert B. Best" <rbest "-at-" atom.cem.uct.ac.za&g
Date:  Thu, 16 Sep 1999 07:22:27 +0200
Subject:  Water structuring in truncated octahedron

Hi all

Does anybody know whether the use of a truncated octahedron as opposed
to a cube as a periodic box is known to have an effect on the rdf of water
models. We have run two water boxes at 300K, one a truncated octahedron
of 846 molecules  and the other a cube of 512 molecules, both with density
exactly 1.00.  The octahedron gives a markedly more structured rdf than the
cube for gOO(r). We are using the SPC/E model implemented in
CHARMM.

Has anyone got any ideas? Or possibly references to water-only
simulations done in an octahedron, since there are already plenty
for orthogonal boxes.

Thanks

Robert




--




________________________________________

Robert Best
89 Sandown Road
Rondebosch
7700
Cape Town
South Africa

email: rbest ( ( at ) ) atom.cem.uct.ac.za
________________________________________



Raw Message Text