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QCPE
THIS INFORMATION IS OBSOLETE AND IS PROVIDED ONLY FOR ITS HISTORICAL VALUE
Main / Catalog / Section10
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509. MOLSV: Molecular Volume and Surface Area
Calculation
by Graham H. Smith, Merck Sharp & Dohme Research
Laboratories, Rahway, New Jersey, 07065
The method used to calculate the volume is based on a
numerical integration using a nearly uniform
distribution of points inside a sphere. The
integration is done atom by atom using the following
procedure. A unit sphere containing 1800 points is
scaled to the size of the atom being considered and
moved to be centered at the atomic center. Then, for
every atom which overlaps the atom in question, a plane
is constructed perpendicular to the connecting line and
which passes through the point of intersection of the
two atomic surfaces. All points which lie on the side
of the plane away from the atomic center are discarded.
When this process is done, the unique volume for this
atom can be calculated as the product of the number of
points remaining and the volume per point value
obtained by dividing the original atom volume by 1800.
This is repeated for all atoms in the structure, and a
final sum is taken to obtain the overall volume.
FORTRAN 77 (VAX)
Lines of Code: 1100
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